RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 GUCA2BQ16661 112 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 TMEM69Q5SWH9 247 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 ZNF66Q6ZN08 573 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 GVQW1Q8N7I0 195 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 SAMD12Q8N8I0 201 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 SECTM1Q8WVN6 248 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 YIPF6Q96EC8 236 aa8.53□□□□□ -1.04
VPS28-214ENST00000531032 S100A16Q96FQ6 103 aaKnown RBP8.53□□□□□ -1.04
VPS28-214ENST00000531032 FYTTD1Q96QD9 318 aaKnown RBP8.53□□□□□ -1.04
VPS28-214ENST00000531032 HYDINQ4G0P3 5121 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 TMEM213A2RRL7 107 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 MEIS3P1A6NDR6 274 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 DHFRP00374 187 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 IGHV3-23P01764 117 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 SMIM18P0DKX4 95 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 HIST1H1BP16401 226 aaKnown RBP8.52□□□□□ -1.05
VPS28-214ENST00000531032 CTRB1P17538 263 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 PSMB6P28072 239 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 FXYD4P59646 89 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 HERV-K104P61576 105 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 RPL8P62917 257 aaKnown RBP8.52□□□□□ -1.05
VPS28-214ENST00000531032 MSMO1Q15800 293 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 CTRB2Q6GPI1 263 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 CLEC19AQ6UXS0 136 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 SLC16A13Q7RTY0 426 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 HOGA1Q86XE5 327 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 TMEM61Q8N0U2 210 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 MFSD4AQ8N468 514 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 OR13F1Q8NGS4 319 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 CACNG8Q8WXS5 425 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 EEF1AKMT3Q96AZ1 226 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 AUNIPQ9H7T9 357 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 TAS2R8Q9NYW2 309 aa8.52□□□□□ -1.05
VPS28-214ENST00000531032 IGLV11-55A0A075B6I3 123 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 CGB1A6NKQ9 187 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 HRASP01112 189 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 PTHLHP12272 177 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 HLA-GP17693 338 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 FCGR2CP31995 323 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 RPS19P39019 145 aaKnown RBP8.51□□□□□ -1.05
VPS28-214ENST00000531032 CATR1Q13166 79 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 FAM106AQ4KMX7 169 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 ZNF57Q68EA5 555 aaPredicted RBP8.51□□□□□ -1.05
VPS28-214ENST00000531032 SSX9Q7RTT3 188 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 TMEM17Q86X19 198 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 OR4A5Q8NH83 315 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 GPHA2Q96T91 129 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 FUNDC2Q9BWH2 189 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 SLC5A7Q9GZV3 580 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 BET1LQ9NYM9 111 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 MLXQ9UH92 298 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 S4R3C0 116 aa8.51□□□□□ -1.05
VPS28-214ENST00000531032 TRBV7-1A0A0A6YYK4 115 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 RBFOX2O43251 390 aaKnown RBP eCLIP8.5□□□□□ -1.054e-8■■■■□ 26.4
VPS28-214ENST00000531032 TNFSF12O43508 249 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 XRCC3O43542 346 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 PPYP01298 95 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 MYOD1P15172 320 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 TAS2R20P59543 309 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 NCS1P62166 190 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 OR4A47Q6IF82 309 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 ZBTB34Q8NCN2 500 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 SLC25A46Q96AG3 418 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 CXorf58Q96LI9 332 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 AIFM2Q9BRQ8 373 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 EHFQ9NZC4 300 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 COMMD3Q9UBI1 195 aa8.5□□□□□ -1.05
VPS28-214ENST00000531032 SMIM31A0A1B0GVY4 71 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 IGLC7A0M8Q6 106 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 ZNF320A2RRD8 509 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 MFSD2BA6NFX1 497 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 REG1AP05451 166 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 FGF2P09038 288 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 C8orf88P0DMB2 117 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 DEFA4P12838 97 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 TAS2R46P59540 309 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 OR2B8PP59922 312 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 VBP1P61758 197 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 POU2AF1Q16633 256 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 ANKRD55Q3KP44 614 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 AADACL3Q5VUY0 350 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 BTNL8Q6UX41 500 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 UNQ9165/PRO28630Q6UXU0 137 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 SPAG16Q8N0X2 631 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 UXS1Q8NBZ7 420 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 OR5AP2Q8NGF4 316 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 OR52B4Q8NGK2 314 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 OR5H2Q8NGV7 314 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 ZNF502Q8TBZ5 544 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 BORCS5Q969J3 196 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 MARC2Q969Z3 335 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 SRSF8Q9BRL6 282 aaKnown RBP8.49□□□□□ -1.05
VPS28-214ENST00000531032 GGTLC1Q9BX51 225 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 CCL28Q9NRJ3 127 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 SELENOKQ9Y6D0 94 aa8.49□□□□□ -1.05
VPS28-214ENST00000531032 LOC102724200A0A096LPH7 203 aaPredicted RBP8.48□□□□□ -1.05
VPS28-214ENST00000531032 TRAV25A0A0B4J276 109 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 FAM25AB3EWG3 89 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 FAM25CB3EWG5 89 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 FAM25GB3EWG6 89 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms