RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 GPX1P07203 203 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 CD14P08571 375 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 IGLC6P0CF74 106 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 FGF6P10767 208 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 NCBP2P52298 156 aaKnown RBP eCLIP2.34□□□□□ -2.03
CD44-229ENST00000528672 UBE2NP61088 152 aaKnown RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 UBA52P62987 128 aaKnown RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 GRB2P62993 217 aaKnown RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 SLC38A11Q08AI6 406 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 PRDX4Q13162 271 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 DHRS2Q13268 280 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 IBA57Q5T440 356 aaKnown RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 TMEM244Q5VVB8 128 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 ALKAL2Q6UX46 152 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 ZNF493Q6ZR52 646 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 ZNF429Q86V71 674 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 P2RY8Q86VZ1 359 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 SLC25A45Q8N413 288 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 C20orf203Q8NBC4 194 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 OR51T1Q8NGJ9 327 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 OR10G6Q8NH81 332 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 NT5CQ8TCD5 201 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 ZNF431Q8TF32 576 aaPredicted RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 FRZBQ92765 325 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 TMEM106AQ96A25 262 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 MAGOHBQ96A72 148 aaKnown RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 RDH12Q96NR8 316 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 LINC01587Q99440 93 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 ZNF471Q9BX82 626 aaPredicted RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 C1QTNF6Q9BXI9 259 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 GNB1LQ9BYB4 327 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 PARP11Q9NR21 331 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 VAX2Q9UIW0 290 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 SIGLEC7Q9Y286 467 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 MED31Q9Y3C7 131 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 INSIG2Q9Y5U4 225 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 IER3IP1Q9Y5U9 82 aa2.34□□□□□ -2.03
CD44-229ENST00000528672 F11RQ9Y624 299 aaKnown RBP2.34□□□□□ -2.03
CD44-229ENST00000528672 PLXND1Q9Y4D7 1925 aa2.34□□□□□ -2.04
CD44-229ENST00000528672 DISP2A7MBM2 1401 aa2.34□□□□□ -2.04
CD44-229ENST00000528672 RGS12O14924 1447 aa2.34□□□□□ -2.04
CD44-229ENST00000528672 ABCC5O15440 1437 aa2.34□□□□□ -2.04
CD44-229ENST00000528672 PTPRMP28827 1452 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 PRXQ9BXM0 1461 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 FRMPD1Q5SYB0 1578 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 IGLV1-36A0A0B4J1U3 117 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TRAV5A0A0B4J249 113 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TRAV26-2A0A0B4J265 109 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 A0A1B0GV50 99 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 A0A1B0GVY2 172 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 NPFFO15130 113 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 CXorf1O96002 111 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 CFDP00746 253 aaPredicted RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 P01737 135 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 BGLAPP02818 100 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 ATP5G1P05496 136 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 PGA5P0DJD9 388 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 HIST1H1DP16402 221 aaKnown RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 SLC35A1P78382 337 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 PRDX1Q06830 199 aaKnown RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 LOXL1Q08397 574 aaPredicted RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 ZNF141Q15928 474 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 IQCJQ1A5X6 159 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TDRG1Q3Y452 100 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TMEM255AQ5JRV8 349 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 MEIG1Q5JSS6 88 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TSPO2Q5TGU0 170 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 AMMECR1LQ6DCA0 310 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 ZNF695Q8IW36 515 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 C11orf53Q8IXP5 236 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 LINC00471Q8N535 108 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TTC9CQ8N5M4 171 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 SLC35G3Q8N808 338 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 NUP35Q8NFH5 326 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 OR52R1Q8NGF1 315 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 OR8B12Q8NGG6 310 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 CT55Q8WUE5 264 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 LRRC29Q8WV35 223 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 SDF2Q99470 211 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TMEM70Q9BUB7 260 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 SFXN3Q9BWM7 321 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 GGTLC1Q9BX51 225 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 MED28Q9H204 178 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 EDA2RQ9HAV5 297 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 CA10Q9NS85 328 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 ZNF586Q9NXT0 402 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 BET1LQ9NYM9 111 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 ZNF226Q9NYT6 803 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TAS2R8Q9NYW2 309 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 DEC1Q9P2X7 70 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 TRMT112Q9UI30 125 aaKnown RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 ZNF443Q9Y2A4 671 aaPredicted RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 ZNF257Q9Y2Q1 563 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 PHLPP1O60346 1717 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 CASKIN1Q8WXD9 1431 aa2.33□□□□□ -2.04
CD44-229ENST00000528672 PRG4Q92954 1404 aaPredicted RBP2.33□□□□□ -2.04
CD44-229ENST00000528672 MYH13Q9UKX3 1938 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 WDR62O43379 1518 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 MAGI3Q5TCQ9 1506 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 BAHCC1Q9P281 2608 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms