RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CCL21O00585 134 aa11.68□□□□□ -0.54
SYNPO-205ENST00000522122 COMPP49747 757 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-205ENST00000522122 RELBQ01201 579 aa11.68□□□□□ -0.54
SYNPO-205ENST00000522122 MRPL37Q9BZE1 423 aaKnown RBP11.68□□□□□ -0.54
SYNPO-205ENST00000522122 ACP7Q6ZNF0 438 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 RNF144BQ7Z419 303 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 C17orf82Q86X59 251 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-205ENST00000522122 HSPB7Q9UBY9 170 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 GRIFINA4D1Z8 144 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 GPR6P46095 362 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-205ENST00000522122 SPATA45Q537H7 98 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 MYOZ3Q8TDC0 251 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 TMEM189A5PLL7 270 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 C17orf98A8MV24 154 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 GDF9O60383 454 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 RPL7P18124 248 aaKnown RBP11.67□□□□□ -0.54
SYNPO-205ENST00000522122 CLDN18P56856 261 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 WBP1Q96G27 269 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 KIF26AQ9ULI4 1882 aaPredicted RBP11.67□□□□□ -0.54
SYNPO-205ENST00000522122 LOC102723996A0A087X1L8 192 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 LEPROTL1O95214 131 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 AMY1AP04745 511 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 UMODP07911 640 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 LCN2P80188 198 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 OR9G1Q8NH87 305 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 NPIPB3Q92617 1050 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 WFIKKN1Q96NZ8 548 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 UQCR10Q9UDW1 63 aa11.67□□□□□ -0.54
SYNPO-205ENST00000522122 LOC389332A0A1B0GUA5 103 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 RPL39P5Q59GN2 51 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 TMEM186Q96B77 213 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 ZFP30Q9Y2G7 519 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 RRHO14718 337 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 GLRXP35754 106 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 TMEM177Q53S58 311 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 SPANXN1Q5VSR9 72 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 ZNF525Q8N782 197 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 TRBV9A0A0B4J1U6 114 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 ZNF738Q8NE65 137 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 CA2P00918 260 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 CA7P43166 264 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 KIR2DL2P43627 348 aaPredicted RBP11.66□□□□□ -0.54
SYNPO-205ENST00000522122 PSG7Q13046 419 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 ABLIM2Q6H8Q1 611 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 NABP1Q96AH0 204 aa11.66□□□□□ -0.54
SYNPO-205ENST00000522122 MRPL32Q9BYC8 188 aaKnown RBP11.66□□□□□ -0.54
SYNPO-205ENST00000522122 MRPS18CQ9Y3D5 142 aaKnown RBP11.66□□□□□ -0.54
SYNPO-205ENST00000522122 IGKV1D-13A0A0B4J2D9 117 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 TCF21O43680 179 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 IGKV1-13P0DP09 117 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 TMEM208Q9BTX3 173 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 UBTD1Q9HAC8 227 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 SDF2L1Q9HCN8 221 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 SH2D7A6NKC9 451 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-205ENST00000522122 IL6RP08887 468 aaPredicted RBP11.65□□□□□ -0.54
SYNPO-205ENST00000522122 CECR9P0C854 216 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 CRYGSP22914 178 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 POLEQ07864 2286 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 SP9P0CG40 484 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 CBLN1P23435 193 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 HERVK_113P61574 105 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 SRSF7Q16629 238 aaKnown RBP eCLIP11.65□□□□□ -0.54
SYNPO-205ENST00000522122 CENPWQ5EE01 88 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 DGAT2L7PQ6IED9 249 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 PCSK4Q6UW60 755 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 CACNA1GO43497 2377 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 COTL1Q14019 142 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 FDCSPQ8NFU4 85 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 PGLYRP4Q96LB8 373 aa11.65□□□□□ -0.54
SYNPO-205ENST00000522122 OR13A1Q8NGR1 328 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 PRR7Q8TB68 274 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 MESP1Q9BRJ9 268 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 IGHV3-48P01763 117 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 MAS1LP35410 378 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 HINT1P49773 126 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 DPF1Q92782 380 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 INTS1Q8N201 2190 aaKnown RBP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 ACACAQ13085 2346 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 ID3Q02535 119 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 TFF3Q07654 80 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 TWIST1Q15672 202 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 GTF3AQ92664 365 aaKnown RBP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 ZNF524Q96C55 264 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 SGK494Q96LW2 274 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 COL25A1Q9BXS0 654 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 CBLN4Q9NTU7 201 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 FCGR2BP31994 310 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 CCL20P78556 96 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 SRSF9Q13242 221 aaKnown RBP eCLIP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 WDR31Q8NA23 367 aa11.64□□□□□ -0.55
SYNPO-205ENST00000522122 FOXD3Q9UJU5 478 aaPredicted RBP11.64□□□□□ -0.55
SYNPO-205ENST00000522122 LNP1A1A4G5 178 aa11.63□□□□□ -0.55
SYNPO-205ENST00000522122 CKS2P33552 79 aa11.63□□□□□ -0.55
SYNPO-205ENST00000522122 TIMM23BQ5SRD1 257 aa11.63□□□□□ -0.55
SYNPO-205ENST00000522122 LPAR2Q9HBW0 351 aa11.63□□□□□ -0.55
SYNPO-205ENST00000522122 KLF7O75840 302 aaPredicted RBP11.63□□□□□ -0.55
SYNPO-205ENST00000522122 MGPP08493 103 aa11.63□□□□□ -0.55
SYNPO-205ENST00000522122 NMUP48645 174 aa11.63□□□□□ -0.55
SYNPO-205ENST00000522122 CFHR1Q03591 330 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms