RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 A0A1W2PRX2 142 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 CRYM-AS1A6NIL9 109 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 UCP1P25874 307 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 G6PCP35575 357 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 TRIM16LQ309B1 348 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 HIST2H2BDQ6DRA6 164 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 TREML4Q6UXN2 200 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 H2BFWTQ7Z2G1 175 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 ZNF695Q8IW36 515 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 MYOZ3Q8TDC0 251 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 SEC22AQ96IW7 307 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 UBE2E2Q96LR5 201 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 TP53RKQ96S44 253 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 SRSF8Q9BRL6 282 aaKnown RBP11.14□□□□□ -0.63
NUP54-216ENST00000514901 WDR12Q9GZL7 423 aaKnown RBP11.14□□□□□ -0.63
NUP54-216ENST00000514901 COMMD5Q9GZQ3 224 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 PRNDQ9UKY0 176 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 VSIG4Q9Y279 399 aa11.14□□□□□ -0.63
NUP54-216ENST00000514901 NOTCH3Q9UM47 2321 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 PIGBOS1A0A0B4J2F0 54 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 NUDT19A8MXV4 375 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 SOX15O60248 233 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 TSPAN15O95858 294 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 RBMS2Q15434 407 aaKnown RBP11.13□□□□□ -0.63
NUP54-216ENST00000514901 SP6Q3SY56 376 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 THOC7Q6I9Y2 204 aaKnown RBP11.13□□□□□ -0.63
NUP54-216ENST00000514901 TTC9CQ8N5M4 171 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 ZNF491Q8N8L2 437 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 OR5T1Q8NG75 326 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 OR1L8Q8NGR8 309 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 FAM110DQ8TAY7 271 aaPredicted RBP11.13□□□□□ -0.63
NUP54-216ENST00000514901 GALNT14Q96FL9 552 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 TMEM222Q9H0R3 208 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 KLK15Q9H2R5 256 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 ZNF355PQ9NSJ1 428 aa11.13□□□□□ -0.63
NUP54-216ENST00000514901 TRAV3A0A0B4J244 114 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 CDS2O95674 445 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 IGKV1-39P01597 117 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 IGKV1D-39P04432 117 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 OR5AC1P0C628 307 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 OR9G9P0C7N8 305 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 ANXA3P12429 323 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 OR2B8PP59922 312 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 KIAA0141Q14154 515 aaPredicted RBP11.12□□□□□ -0.63
NUP54-216ENST00000514901 ZNF846Q147U1 533 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 ASPHD1Q5U4P2 390 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 LCNL1Q6ZST4 164 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 HSD17B13Q7Z5P4 300 aaPredicted RBP11.12□□□□□ -0.63
NUP54-216ENST00000514901 ADAD2Q8NCV1 583 aaKnown RBP11.12□□□□□ -0.63
NUP54-216ENST00000514901 KLHL30-AS1Q8NEE0 82 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 OR4A16Q8NH70 328 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 GLYATL2Q8WU03 294 aa11.12□□□□□ -0.63
NUP54-216ENST00000514901 FYTTD1Q96QD9 318 aaKnown RBP11.12□□□□□ -0.63
NUP54-216ENST00000514901 QTRT1Q9BXR0 403 aaKnown RBP11.12□□□□□ -0.63
NUP54-216ENST00000514901 A0A0G2JLM5 398 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 LINC00854A0A1B0GVQ3 168 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 NPIPB5A8MRT5 1133 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TEX22C9J3V5 150 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TRGV3P03979 118 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TRAPPC2P0DI81 140 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TRAPPC2BP0DI82 140 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 AKR1C4P17516 323 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TMEM128Q5BJH2 165 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 C10orf55Q5SWW7 151 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 FAM219AQ8IW50 185 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 OR5B3Q8NH48 314 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 C4orf3Q8WVX3 66 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 IL22RA2Q969J5 263 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 RRNAD1Q96FB5 475 aaKnown RBP11.11□□□□□ -0.63
NUP54-216ENST00000514901 USMG5Q96IX5 58 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TMEM56Q96MV1 263 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TMEM14BQ9NUH8 114 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 COA4Q9NYJ1 87 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 ZNF257Q9Y2Q1 563 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 OR51B2Q9Y5P1 312 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TMEM56-RWDD3S4R434 201 aa11.11□□□□□ -0.63
NUP54-216ENST00000514901 TEX50A0A1B0GTY4 177 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 C15orf61A6NNL5 157 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 E7EUB6 86 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 NDUFB6O95139 128 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 DHFRP00374 187 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 PF4P02776 101 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 CRYGCP07315 174 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 APELAP0DMC3 54 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 MYCNOSP40205 109 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 AKR1C2P52895 323 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 TPPP2P59282 170 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 UBE2MP61081 183 aaKnown RBP11.1□□□□□ -0.63
NUP54-216ENST00000514901 SRPXP78539 464 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 RUNX1Q01196 453 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 TMED4Q7Z7H5 227 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 MRPL41Q8IXM3 137 aaKnown RBP11.1□□□□□ -0.63
NUP54-216ENST00000514901 RBPMSQ93062 196 aaKnown RBP11.1□□□□□ -0.63
NUP54-216ENST00000514901 TMEM230Q96A57 120 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 MS4A10Q96PG2 267 aa11.1□□□□□ -0.63
NUP54-216ENST00000514901 C13orf42A0A1B0GVH6 325 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 HMX3A6NHT5 357 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 CCL24O00175 119 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 PLA2G10O15496 165 aa11.09□□□□□ -0.63
NUP54-216ENST00000514901 LYRM1O43325 122 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms