RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CEP350Q5VT06 3117 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 WDR90Q96KV7 1748 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 TMEM238C9JI98 176 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 J3QR06 171 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 SSBP3Q9BWW4 388 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 SLC25A2Q9BXI2 301 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 PLA2G2FQ9BZM2 168 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 SEPSECSQ9HD40 501 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 HIGD1AQ9Y241 93 aa7.5□□□□□ -1.21
LIMCH1-218ENST00000513024 TRBV20OR9-2A0A075B6H5 130 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 COX7A1P24310 79 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 TNXAQ16473 311 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 CCL17Q92583 94 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 DLX4Q92988 240 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 NEUROG3Q9Y4Z2 214 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 SELENOKQ9Y6D0 94 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 PDLIM4P50479 330 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 ADAMTSL5Q6ZMM2 481 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 SH3BGRL3Q9H299 93 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 SDF2L1Q9HCN8 221 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 YAE1D1Q9NRH1 226 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 IL36RNQ9UBH0 155 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 IFNL4K9M1U5 179 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 CD5LO43866 347 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 NDUFC2O95298 119 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 CD8AP01732 235 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 COX5BP10606 129 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 PF4V1P10720 104 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 TSPOP30536 169 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 SUMO2P61956 95 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 P2RY6Q15077 328 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 HEPN1Q6WQI6 88 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 MDC1Q14676 2089 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 RBMY1BA6NDE4 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 RBMY1EA6NEQ0 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 FAM181BA6NEQ2 426 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 EREGO14944 169 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 LGALS1P09382 135 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 RBMY1DP0C7P1 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 RBMY1A1P0DJD3 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 RBMY1CP0DJD4 496 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 HTN1P15515 57 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 TMEM78Q5T7P6 136 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 ASCL5Q7RTU5 278 aa7.49□□□□□ -1.21
LIMCH1-218ENST00000513024 CCDC88CQ9P219 2028 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 TRAV38-1A0A0B4J264 116 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 GGTLC3B5MD39 225 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 J3QKU1 62 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 RAMP1O60894 148 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 APELAP0DMC3 54 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 ANOS1P23352 680 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 CENPWQ5EE01 88 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 TMEM92Q6UXU6 159 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 C1QL4Q86Z23 238 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 C1orf174Q8IYL3 243 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 PLPPR1Q8TBJ4 325 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 RNASEH2CQ8TDP1 164 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 ZNF714Q96N38 554 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 RTN4RQ9BZR6 473 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 GP6Q9HCN6 339 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 TBX6O95947 436 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 TRACP01848 142 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 MPV17L2Q567V2 206 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 SLC25A38Q96DW6 304 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 TSSC4Q9Y5U2 329 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 MPC1Q9Y5U8 109 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 LIPT2A6NK58 231 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 CELA2BP08218 269 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 ARL14EPLP0DKL9 152 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 SRD5A2P31213 254 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 SSTR5P35346 364 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 GAGE1Q13065 139 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 GGTLC2Q14390 218 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 RTP5Q14D33 572 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 CXorf66Q5JRM2 361 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 SYT8Q8NBV8 401 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 SMIM8Q96KF7 97 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 CCL19Q99731 98 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 SS18L2Q9UHA2 77 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 ERG28Q9UKR5 140 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 EPDR1Q9UM22 224 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 ATG2BQ96BY7 2078 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 MIA3Q5JRA6 1907 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 A0A1W2PRD5 423 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 A0A1W2PRF3 423 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 A0A1W2PRM7 423 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 COLCA2A8K830 154 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 B5MCH6 92 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 NPSP0C0P6 89 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 C8orf88P0DMB2 117 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 ERVK11-1P61568 191 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 LSM6P62312 80 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 OR4A5Q8NH83 315 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 DYNLRB2Q8TF09 96 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 PRSS27Q9BQR3 290 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 PRDM6Q9NQX0 595 aa7.48□□□□□ -1.21
LIMCH1-218ENST00000513024 IFITM1P13164 125 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 TMEM258P61165 79 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 TMEM144Q7Z5S9 345 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 ZNF664Q8N3J9 261 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms