RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 IGHV1OR21-1A0A087WYE8 117 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 IGLV1-36A0A0B4J1U3 117 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 SCO2A0A1W2PP80 73 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 PIN1P1O15428 100 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 ZNF205O95201 554 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 SNRPCP09234 159 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 GZMBP10144 247 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 CCL2P13500 99 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 MESP2Q0VG99 397 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 ZNF525Q8N782 197 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 CST9LQ9H4G1 147 aa9.57□□□□□ -0.88
LIMCH1-217ENST00000512946 ATP5G2Q06055 141 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 PPDPFLQ8WWR9 84 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 NDUFC2O95298 119 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 SRFP11831 508 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 CEACAM1P13688 526 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 UNQ5815/PRO19632Q6UWF5 114 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 SEMA5BQ9P283 1151 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 MOSP00540 346 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 FAM74A4Q5TZK3 123 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 KCNK17Q96T54 332 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 ZNF703Q9H7S9 590 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 FBLN5Q9UBX5 448 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 EPDR1Q9UM22 224 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 AKAP12Q02952 1782 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 C9JCJ5 164 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 CGAP01215 116 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 LIFP15018 202 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 PRTN3P24158 256 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 CCL7P80098 99 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 RTP5Q14D33 572 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 TEX38Q6PEX7 206 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 FZR1Q9UM11 496 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 MON2Q7Z3U7 1717 aa9.56□□□□□ -0.88
LIMCH1-217ENST00000512946 LRP6O75581 1613 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 MSGN1A6NI15 193 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 NTN1O95631 604 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 TRACP01848 142 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 HCP5Q6MZN7 132 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 ZNF818PQ6ZRF7 136 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 RPRMLQ8N4K4 120 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 PHF7Q9BWX1 381 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 FOXI3A8MTJ6 420 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 F8W1H4 67 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 KLF4O43474 513 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 HOXB3P14651 431 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 TMEM196Q5HYL7 178 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 APOBEC4Q8WW27 367 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 UCP2P55851 309 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 C21orf140B9A014 251 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 FAM166AQ6J272 317 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE2AQ6NT46 116 aa9.55□□□□□ -0.88
LIMCH1-217ENST00000512946 LOXHD1Q8IVV2 1947 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 A6NNC1 897 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 FAM90A9PA6NNJ1 464 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 C3AR1Q16581 482 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 NEGR1Q7Z3B1 354 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 TRAV14DV4A0A0A6YYC5 116 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 TGFAP01135 160 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 IGHMP01871 453 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 PSG4Q00888 419 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 ADAMTSL5Q6ZMM2 481 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 TRAV12-3A0A0B4J271 114 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 PSMB11A5LHX3 300 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 MMP23AO75900 390 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 ABHD12Q8N2K0 398 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 AGMATQ9BSE5 352 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 IFITM1P13164 125 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 PYY3Q5JQD4 70 aa9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 RSPO2Q6UXX9 243 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-217ENST00000512946 NRXN3Q9Y4C0 1643 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE12JA6NER3 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE7O76087 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE12FP0CL80 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE12GP0CL81 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE12IP0CL82 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 EGR1P18146 543 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GPR6P46095 362 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 ATP5G3P48201 142 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GAGE4Q13068 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 KIR3DS1Q14943 382 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 PTCRAQ6ISU1 281 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 GLRX5Q86SX6 157 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 M0R381 172 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 IGHV3-21A0A0B4J1V1 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 TM4SF5O14894 197 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 PF4V1P10720 104 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 BOD1L2Q8IYS8 172 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 WFDC6Q9BQY6 131 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 IGHV5-51A0A0C4DH38 117 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 C16orf97H3BN30 126 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 IGFBP3P17936 291 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 MAGEA5P43359 124 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 TM4SF4P48230 202 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 PVRIGQ6DKI7 326 aa9.53□□□□□ -0.88
LIMCH1-217ENST00000512946 A8MWP6 167 aa9.52□□□□□ -0.88
LIMCH1-217ENST00000512946 TMEM229AB2RXF0 380 aa9.52□□□□□ -0.88
LIMCH1-217ENST00000512946 PSG1P11464 419 aa9.52□□□□□ -0.88
LIMCH1-217ENST00000512946 TSPAN7P41732 249 aa9.52□□□□□ -0.88
LIMCH1-217ENST00000512946 CHAC1Q9BUX1 264 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms