RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	ZNF391	Q9UJN7	358 aa		3.16	□□□□□ -1.9
SF3B1-212	ENST00000496458	DKKL1	Q9UK85	242 aa		3.16	□□□□□ -1.9
SF3B1-212	ENST00000496458	ZFP30	Q9Y2G7	519 aa		3.16	□□□□□ -1.9
SF3B1-212	ENST00000496458	ORC6	Q9Y5N6	252 aa		3.16	□□□□□ -1.9
SF3B1-212	ENST00000496458	TMEM56-RWDD3	S4R434	201 aa		3.16	□□□□□ -1.9
SF3B1-212	ENST00000496458	KMT2E	Q8IZD2	1858 aa		3.16	□□□□□ -1.9
SF3B1-212	ENST00000496458	SCN2A	Q99250	2005 aa		3.15	□□□□□ -1.9
SF3B1-212	ENST00000496458	LTBP2	Q14767	1821 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	VCAN	P13611	3396 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458		A0A0J9YXV3	536 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	TMEM150B	A6NC51	233 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	HMSD	A8MTL9	139 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	BBIP1	A8MTZ0	92 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	LYRM1	O43325	122 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR2T1	O43869	369 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	REM1	O75628	298 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	RP2	O75695	350 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR2J2	O76002	312 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	CNIH1	O95406	144 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	IGF2	P01344	180 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	MT-ND4	P03905	459 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	CD5	P06127	495 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	CST2	P09228	141 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	SULT1A3	P0DMM9	295 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	SULT1A4	P0DMN0	295 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	CD99	P14209	185 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	TCL1A	P56279	114 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	LSM3	P62310	102 aa	Known RBP	3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	RPL19	P84098	196 aa	Known RBP	3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	PRDX1	Q06830	199 aa	Known RBP	3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	PPP1R1A	Q13522	171 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	ZNF235	Q14590	738 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	HMGN3	Q15651	99 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	MEST	Q5EB52	335 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	TMEM244	Q5VVB8	128 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	C6orf120	Q7Z4R8	191 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	CLDN22	Q8N7P3	220 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR51D1	Q8NGF3	324 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR4S2	Q8NH73	311 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	CD200R1	Q8TD46	325 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	SLC37A2	Q8TED4	501 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	ASB17	Q8WXJ9	295 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	HIST1H2BA	Q96A08	127 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	ROPN1L	Q96C74	230 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	ZNF382	Q96SR6	550 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	S100A13	Q99584	98 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	HOPX	Q9BPY8	73 aa	Predicted RBP	3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	SUCNR1	Q9BXA5	334 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	SNHG12	Q9BXW3	62 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	PRO3102	Q9H379	93 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	FBXL15	Q9H469	300 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	VSIR	Q9H7M9	311 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	GSKIP	Q9P0R6	139 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	GBF1	Q92538	1859 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	ZDBF2	Q9HCK1	2354 aa		3.15	□□□□□ -1.91
SF3B1-212	ENST00000496458	TRAV8-6	A0A0B4J262	113 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	TMEM269	A0A1B0GVZ9	245 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	C20orf202	A1L168	122 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	PRORSD1P	A6NEY8	169 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	RBFOX3	A6NFN3	312 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	MCRIP1	C9JLW8	97 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	C15orf65	H3BRN8	121 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	MFNG	O00587	321 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	TCF21	O43680	179 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	HAND1	O96004	215 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	APOD	P05090	189 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	UBB	P0CG47	229 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	GTF2F2	P13984	249 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	CD70	P32970	193 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	P2RX1	P51575	399 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	ZNF136	P52737	540 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	CRISP3	P54108	245 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	UBA52	P62987	128 aa	Known RBP	3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	HBG1	P69891	147 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	HBG2	P69892	147 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	CDK6	Q00534	326 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	SMAGP	Q0VAQ4	97 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	GINS1	Q14691	196 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	JOSD1	Q15040	202 aa	Predicted RBP	3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	SURF2	Q15527	256 aa	Predicted RBP	3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	TAF9	Q16594	264 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	TMEM241	Q24JQ0	296 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	SCGB2B2	Q4G0G5	96 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	CLEC12A	Q5QGZ9	265 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	NCMAP	Q5T1S8	102 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	AKR1C8P	Q5T2L2	129 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	FAM162B	Q5T6X4	162 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	TRIQK	Q629K1	86 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	FAM71E1	Q6IPT2	247 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	LAIR2	Q6ISS4	152 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	NPB	Q8NG41	125 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR11H7	Q8NGC8	314 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR4P4	Q8NGL7	312 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	OR10G9	Q8NGN4	311 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	EEF1AKMT1	Q8WVE0	214 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	C11orf40	Q8WZ69	217 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	GHSR	Q92847	366 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	LRRC58	Q96CX6	371 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	PKMYT1	Q99640	499 aa		3.14	□□□□□ -1.91
SF3B1-212	ENST00000496458	VPS25	Q9BRG1	176 aa		3.14	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms