RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 A0A0A6YYH2 397 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 TMEM235A6NFC5 223 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 A6NJ64 397 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 TEX22C9J3V5 150 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 HPRT1P00492 218 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 HLA-AP01891 365 aaKnown RBP8.72□□□□□ -1.01
COL6A3-213ENST00000493475 FGF2P09038 288 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 NQO2P16083 231 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 PSMB9P28065 219 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 FGF9P31371 208 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-213ENST00000493475 CBX5P45973 191 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 TAS2R31P59538 309 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 IZUMO2Q6UXV1 221 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 SSX9Q7RTT3 188 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 SPAG16Q8N0X2 631 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 PUSL1Q8N0Z8 303 aaKnown RBP8.72□□□□□ -1.01
COL6A3-213ENST00000493475 UXS1Q8NBZ7 420 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 BEST4Q8NFU0 473 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 DMBX1Q8NFW5 382 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 OR13F1Q8NGS4 319 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 NUDCD2Q8WVJ2 157 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 SECTM1Q8WVN6 248 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 DIABLOQ9NR28 239 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 GAR1Q9NY12 217 aaKnown RBP8.72□□□□□ -1.01
COL6A3-213ENST00000493475 MRPL27Q9P0M9 148 aaKnown RBP8.72□□□□□ -1.01
COL6A3-213ENST00000493475 RRP15Q9Y3B9 282 aaKnown RBP8.72□□□□□ -1.01
COL6A3-213ENST00000493475 ETV7Q9Y603 341 aa8.72□□□□□ -1.01
COL6A3-213ENST00000493475 IGKV1D-8A0A087WSZ0 117 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RBMY1BA6NDE4 496 aaKnown RBP8.71□□□□□ -1.02
COL6A3-213ENST00000493475 CXorf65A6NEN9 183 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RBMY1EA6NEQ0 496 aaKnown RBP8.71□□□□□ -1.02
COL6A3-213ENST00000493475 NUPR2A6NF83 97 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 UBE2CO00762 179 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM127O75204 238 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RBMXL2O75526 392 aaKnown RBP8.71□□□□□ -1.02
COL6A3-213ENST00000493475 IGHV3-23P01764 117 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 CLEC3BP05452 202 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RBMY1DP0C7P1 496 aaKnown RBP8.71□□□□□ -1.02
COL6A3-213ENST00000493475 CTRB1P17538 263 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 S100GP29377 79 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 FCGR2CP31995 323 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RPL30P62888 115 aaKnown RBP8.71□□□□□ -1.02
COL6A3-213ENST00000493475 TIMM50Q3ZCQ8 353 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 CTRB2Q6GPI1 263 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 SFXN4Q6P4A7 337 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM61Q8N0U2 210 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 TSPAN14Q8NG11 270 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 SPAG8Q99932 426 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RHBDL2Q9NX52 303 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 RAB26Q9ULW5 256 aa8.71□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM213A2RRL7 107 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 SCAF4O95104 1147 aaKnown RBP8.7□□□□□ -1.02
COL6A3-213ENST00000493475 IL6RP08887 468 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-213ENST00000493475 AREGP15514 252 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 PTBP1P26599 531 aaKnown RBP eCLIP8.7□□□□□ -1.02
COL6A3-213ENST00000493475 GPR183P32249 361 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 BMI1P35226 326 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 HERV-K104P61576 105 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 ZNF585BQ52M93 769 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 AADACL3Q5VUY0 350 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 BTNL8Q6UX41 500 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 OR2C3Q8N628 320 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 VN1R17PQ8TDU5 208 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 NRG4Q8WWG1 115 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 CCDC140Q96MF4 163 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 ATP6V0BQ99437 205 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 QTRT1Q9BXR0 403 aaKnown RBP8.7□□□□□ -1.02
COL6A3-213ENST00000493475 SLC5A7Q9GZV3 580 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 TXNL4BQ9NX01 149 aaKnown RBP8.7□□□□□ -1.02
COL6A3-213ENST00000493475 COMMD9Q9P000 198 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 TP53TG1Q9Y2A0 90 aa8.7□□□□□ -1.02
COL6A3-213ENST00000493475 KLK5Q9Y337 293 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-213ENST00000493475 IGLV11-55A0A075B6I3 123 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 TRAV18A0A075B6X5 111 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 IGKV1D-13A0A0B4J2D9 117 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 SMIM30A4D0T7 59 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 OR4C46A6NHA9 309 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 TNFSF12O43508 249 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 PPYP01298 95 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 IGKV1-13P0DP09 117 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 CMC4P56277 68 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-213ENST00000493475 TM4SF20Q53R12 229 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 UBE2UQ5VVX9 321 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 SPSB3Q6PJ21 355 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 Q6ZWC4 215 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 CMTM1Q8IZ96 169 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 STPG3Q8N7X2 389 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 LGALS14Q8TCE9 139 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 CACNG8Q8WXS5 425 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 FANCD2OSQ96PS1 177 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 WFDC10AQ9H1F0 79 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 C5orf66Q9H5L9 145 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 PLEKHA2Q9HB19 425 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 IFT46Q9NQC8 304 aa8.69□□□□□ -1.02
COL6A3-213ENST00000493475 DAZ1Q9NQZ3 744 aaKnown RBP8.69□□□□□ -1.02
COL6A3-213ENST00000493475 ELF5Q9UKW6 265 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-213ENST00000493475 CSMD3Q7Z407 3707 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 ANKRD65E5RJM6 399 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 SULT1C2O00338 296 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 TGOLN2O43493 480 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms