RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 OR10X1Q8NGY0 326 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 HIST1H2BAQ96A08 127 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 ISOC2Q96AB3 205 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 BET1LQ9NYM9 111 aa17.19■□□□□ 0.34
CCDC88B-208ENST00000492980 A0A1W2PPE2 198 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 SAA1P0DJI8 122 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 COL8A2P25067 703 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 REG1BP48304 166 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 ACOT6Q3I5F7 207 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 FAM71F2Q6NXP2 309 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 OSR1Q8TAX0 266 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 RAB24Q969Q5 203 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 NIPSNAP3BQ9BS92 247 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 TMPRSS5Q9H3S3 457 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 A0A087X0M5 115 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 A0A1B0GX30 115 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 KBTBD11O94819 623 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 PRCDQ00LT1 54 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 TVP23CQ96ET8 276 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 TMEM204Q9BSN7 226 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 HINT2Q9BX68 163 aa17.18■□□□□ 0.34
CCDC88B-208ENST00000492980 A0A1W2PPH5 198 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 CA2P00918 260 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 RBMS3Q6XE24 437 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 TMEM186Q96B77 213 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 MGST2Q99735 147 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 TRBV23-1A0A0A0MS06 115 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 CYB5BO43169 146 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 IGHV1-8P0DP01 117 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 DEFA4P12838 97 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 FOLR2P14207 255 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 DIAPH2-AS1Q14236 149 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 TMEM177Q53S58 311 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 SLC35E3Q7Z769 313 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 C11orf42Q8N5U0 333 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 ST6GALNAC6Q969X2 333 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 HARBI1Q96MB7 349 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 NABP2Q9BQ15 211 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 PLEKHA3Q9HB20 300 aa17.17■□□□□ 0.34
CCDC88B-208ENST00000492980 TEX50A0A1B0GTY4 177 aa17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 SOX15O60248 233 aa17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 OPRK1P41145 380 aa17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 ARSJQ5FYB0 599 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 GCSAMLQ5JQS6 135 aa17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 OR9G1Q8NH87 305 aa17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 C1orf159Q96HA4 380 aa17.16■□□□□ 0.34
CCDC88B-208ENST00000492980 ANKHD1Q8IWZ3 2542 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 SEC14L6B5MCN3 397 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 MT-ND4LP03901 98 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 OPN1MWP04001 364 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 OPN1MW2P0DN77 364 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 OPN1MW3P0DN78 364 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 CTRB1P17538 263 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 CDC34P49427 236 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 PPOXP50336 477 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 ZNF137PP52743 207 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 CTRB2Q6GPI1 263 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 GGTLC1Q9BX51 225 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 LSM4Q9Y4Z0 139 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 ATRXP46100 2492 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 YIF1AO95070 293 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 FSTL3O95633 263 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 IGHV2-70P01814 119 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 TAGLN2P37802 199 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 CD81P60033 236 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 NPVFQ9HCQ7 196 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 FKBP11Q9NYL4 201 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 ZZEF1O43149 2961 aa17.15■□□□□ 0.34
CCDC88B-208ENST00000492980 MEF2BQ02080 365 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 ZNF841Q6ZN19 808 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 FLYWCH2Q96CP2 140 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 RALYQ9UKM9 306 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 A0A087WWC5 75 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 PDPNQ86YL7 162 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 OR5B3Q8NH48 314 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 TMEM133Q9H2Q1 129 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 MANBALQ9NQG1 85 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 PXMP4Q9Y6I8 212 aa17.14■□□□□ 0.33
CCDC88B-208ENST00000492980 OR2C1O95371 312 aa17.13■□□□□ 0.33
CCDC88B-208ENST00000492980 PSMB3P49720 205 aa17.13■□□□□ 0.33
CCDC88B-208ENST00000492980 GATAD1Q8WUU5 269 aa17.13■□□□□ 0.33
CCDC88B-208ENST00000492980 YPEL4Q96NS1 127 aa17.13■□□□□ 0.33
CCDC88B-208ENST00000492980 LY6DQ14210 128 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 RNF212Q495C1 297 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 MIC13Q5XKP0 118 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 FAM24BQ8N5W8 94 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 OR4C13Q8NGP0 309 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 ZNF727A8MUV8 499 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 TGIF2LXQ8IUE1 241 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 RAB1CQ92928 201 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 PCGF1Q9BSM1 259 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 PRORYQ9H606 182 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 WASHC3Q9Y3C0 194 aa17.12■□□□□ 0.33
CCDC88B-208ENST00000492980 RAB13P51153 203 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 BSXQ3C1V8 233 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 IQCF2Q8IXL9 164 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 PATZ1Q9HBE1 687 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 TNCP24821 2201 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 FNDC10F2Z333 226 aa17.11■□□□□ 0.33
CCDC88B-208ENST00000492980 MAS1LP35410 378 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms