RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SLC25A42Q86VD7 318 aa18.9■□□□□ 0.62
UPF3A-209ENST00000492270 DYNC2LI1Q8TCX1 351 aa18.9■□□□□ 0.62
UPF3A-209ENST00000492270 FCAMRQ8WWV6 532 aa18.9■□□□□ 0.62
UPF3A-209ENST00000492270 DGCR14Q96DF8 476 aaKnown RBP18.9■□□□□ 0.62
UPF3A-209ENST00000492270 RSRP1Q9BUV0 290 aa18.9■□□□□ 0.62
UPF3A-209ENST00000492270 LSM4Q9Y4Z0 139 aaKnown RBP18.9■□□□□ 0.62
UPF3A-209ENST00000492270 MARCH11A6NNE9 402 aa18.89■□□□□ 0.61
UPF3A-209ENST00000492270 RPL5P46777 297 aaKnown RBP18.89■□□□□ 0.61
UPF3A-209ENST00000492270 OR2B8PP59922 312 aa18.89■□□□□ 0.61
UPF3A-209ENST00000492270 ATP5G2Q06055 141 aa18.89■□□□□ 0.61
UPF3A-209ENST00000492270 KLF5Q13887 457 aaPredicted RBP18.89■□□□□ 0.61
UPF3A-209ENST00000492270 MTFP1Q9UDX5 166 aa18.89■□□□□ 0.61
UPF3A-209ENST00000492270 CD3DP04234 171 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 PSMB6P28072 239 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 SYNJ2BPP57105 145 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 C15orf32Q32M92 178 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 NECAP1Q8NC96 275 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 FANCD2OSQ96PS1 177 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 OR4C12Q96R67 309 aa18.88■□□□□ 0.61
UPF3A-209ENST00000492270 DNAH9Q9NYC9 4486 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 CRYGCP07315 174 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 SPNP16150 400 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 CTRB1P17538 263 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 G6PCP35575 357 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 ERVK-16P61578 105 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 RNASE10Q5GAN6 216 aaKnown RBP18.87■□□□□ 0.61
UPF3A-209ENST00000492270 CTRB2Q6GPI1 263 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 LPCAT3Q6P1A2 487 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 TBC1D26Q86UD7 250 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 B9D2Q9BPU9 175 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 BCL7BQ9BQE9 202 aa18.87■□□□□ 0.61
UPF3A-209ENST00000492270 CCDC59Q9P031 241 aaKnown RBP18.87■□□□□ 0.61
UPF3A-209ENST00000492270 BMPR1BO00238 502 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 TPPPO94811 219 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 NDUFB8O95169 186 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 KRASP01116 189 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 UCP3P55916 312 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 CD69Q07108 199 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 RPEL1Q2QD12 228 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 SLC38A6Q8IZM9 456 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 OR4D10Q8NGI6 311 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 ELOVL1Q9BW60 279 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 COMMD5Q9GZQ3 224 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 FBXL7Q9UJT9 491 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 S4R3C0 116 aa18.86■□□□□ 0.61
UPF3A-209ENST00000492270 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP18.85■□□□□ 0.61
UPF3A-209ENST00000492270 IGLC7A0M8Q6 106 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 H3BMQ9 156 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 IGHV3-23P01764 117 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 DCTN2Q13561 401 aaKnown RBP18.85■□□□□ 0.61
UPF3A-209ENST00000492270 IL34Q6ZMJ4 242 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 LHFPL1Q86WI0 220 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 OR10W1Q8NGF6 305 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 OR9G4Q8NGQ1 327 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 OR6Q1Q8NGQ2 317 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 ISOC1Q96CN7 298 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 NSG2Q9Y328 171 aa18.85■□□□□ 0.61
UPF3A-209ENST00000492270 PPP5D1E7EU14 171 aa18.84■□□□□ 0.61
UPF3A-209ENST00000492270 IFNA6P05013 189 aa18.84■□□□□ 0.61
UPF3A-209ENST00000492270 PI3P19957 117 aa18.84■□□□□ 0.61
UPF3A-209ENST00000492270 C11orf87Q6NUJ2 197 aa18.84■□□□□ 0.61
UPF3A-209ENST00000492270 C15orf40Q8WUR7 153 aa18.84■□□□□ 0.61
UPF3A-209ENST00000492270 TEX50A0A1B0GTY4 177 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 GABARAPH6UMI1 98 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 NOL3O60936 208 aaKnown RBP18.83■□□□□ 0.6
UPF3A-209ENST00000492270 IGLV1-51P01701 117 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 PPP5CP53041 499 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 ARRDC1Q8N5I2 433 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 TMEM229BQ8NBD8 167 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 QTRT1Q9BXR0 403 aaKnown RBP18.83■□□□□ 0.6
UPF3A-209ENST00000492270 DMRT1Q9Y5R6 373 aa18.83■□□□□ 0.6
UPF3A-209ENST00000492270 IGLV11-55A0A075B6I3 123 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 IGKV1-39P01597 117 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 CD74P04233 296 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 IGKV1D-39P04432 117 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 FGF2P09038 288 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 DEFA4P12838 97 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 GP9P14770 177 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 PGAM2P15259 253 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 TBPP20226 339 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 S100GP29377 79 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 KLK9Q2XQG4 91 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 DIRAS2Q96HU8 199 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 CCDC140Q96MF4 163 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 SLIRPQ9GZT3 109 aaKnown RBP18.82■□□□□ 0.6
UPF3A-209ENST00000492270 C6orf62Q9GZU0 229 aaPredicted RBP18.82■□□□□ 0.6
UPF3A-209ENST00000492270 KLK9Q9UKQ9 250 aa18.82■□□□□ 0.6
UPF3A-209ENST00000492270 DHFRP00374 187 aa18.81■□□□□ 0.6
UPF3A-209ENST00000492270 HLA-AP01891 365 aaKnown RBP18.81■□□□□ 0.6
UPF3A-209ENST00000492270 TAS2R19P59542 299 aa18.81■□□□□ 0.6
UPF3A-209ENST00000492270 IL18Q14116 193 aa18.81■□□□□ 0.6
UPF3A-209ENST00000492270 FAAP20Q6NZ36 180 aa18.81■□□□□ 0.6
UPF3A-209ENST00000492270 SMIM4Q8WVI0 70 aa18.81■□□□□ 0.6
UPF3A-209ENST00000492270 CEPT1Q9Y6K0 416 aa18.81■□□□□ 0.6
UPF3A-209ENST00000492270 DBX1A6NMT0 343 aa18.8■□□□□ 0.6
UPF3A-209ENST00000492270 RAB3DO95716 219 aa18.8■□□□□ 0.6
UPF3A-209ENST00000492270 CSN3P07498 182 aa18.8■□□□□ 0.6
UPF3A-209ENST00000492270 TRAPPC2P0DI81 140 aa18.8■□□□□ 0.6
UPF3A-209ENST00000492270 TRAPPC2BP0DI82 140 aa18.8■□□□□ 0.6
UPF3A-209ENST00000492270 HIST1H1BP16401 226 aaKnown RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms