RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ADAT1Q9BUB4 502 aaKnown RBP0.8□□□□□ -2.28
SCN1A-206ENST00000491429 XAGE1AQ9HD64 81 aa0.8□□□□□ -2.28
SCN1A-206ENST00000491429 PAQR5Q9NXK6 330 aaPredicted RBP0.8□□□□□ -2.28
SCN1A-206ENST00000491429 CUL9Q8IWT3 2517 aa0.8□□□□□ -2.28
SCN1A-206ENST00000491429 IGHV1-69-2A0A0G2JMI3 117 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 GGT3PA6NGU5 568 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 OR51F1A6NGY5 319 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 EVPLLA8MZ36 301 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 MSMBP08118 114 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 UBBP0CG47 229 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 CD151P48509 253 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 EVX1P49640 407 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 TNFAIP6P98066 277 aaPredicted RBP0.79□□□□□ -2.28
SCN1A-206ENST00000491429 C1orf195Q5TG92 126 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 C9orf163Q8N9P6 203 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 OR1M1Q8NGA1 313 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 ANKRD7Q92527 254 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 DIRAS2Q96HU8 199 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 OR8D2Q9GZM6 311 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 OR51I2Q9H344 312 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 AK3Q9UIJ7 227 aa0.79□□□□□ -2.28
SCN1A-206ENST00000491429 SCAF11Q99590 1463 aaKnown RBP0.79□□□□□ -2.28
SCN1A-206ENST00000491429 SIPA1L1O43166 1804 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 A0A0A6YYH2 397 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 TRAPPC13A5PLN9 417 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 A6NJ64 397 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 IBA57-AS1B1ANH7 110 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 DISC1C4P0D8 188 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 M0QZ92 97 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 CXCR6O00574 342 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 MRPS14O60783 128 aaKnown RBP0.78□□□□□ -2.28
SCN1A-206ENST00000491429 APOEP02649 317 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 SULT1A3P0DMM9 295 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 SULT1A4P0DMN0 295 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 RPS12P25398 132 aaKnown RBP0.78□□□□□ -2.28
SCN1A-206ENST00000491429 CASQ1P31415 396 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 POLR2GP62487 172 aaKnown RBP eCLIP0.78□□□□□ -2.28
SCN1A-206ENST00000491429 MED21Q13503 144 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 KIAA2026Q5HYC2 2103 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 FAM151BQ6UXP7 276 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 DYNAPQ8N1N2 210 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 TMEM156Q8N614 296 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 OR8B3Q8NGG8 313 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 FAM96AQ9H5X1 160 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 FGFR1OP2Q9NVK5 253 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 FUT9Q9Y231 359 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 KIF24Q5T7B8 1368 aa0.78□□□□□ -2.28
SCN1A-206ENST00000491429 NAV1Q8NEY1 1877 aa0.78□□□□□ -2.29
SCN1A-206ENST00000491429 DICER1Q9UPY3 1922 aaKnown RBP0.77□□□□□ -2.29
SCN1A-206ENST00000491429 CCDC88CQ9P219 2028 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 H0Y980 276 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 SLC22A1O15245 554 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 YEATS4O95619 227 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 TPM3P06753 285 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 SRP19P09132 144 aaKnown RBP0.77□□□□□ -2.29
SCN1A-206ENST00000491429 OCM2P0CE71 109 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 C8orf88P0DMB2 117 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 KCNE1P15382 129 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 CCR7P32248 378 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 EIF2B2P49770 351 aaKnown RBP0.77□□□□□ -2.29
SCN1A-206ENST00000491429 BATFQ16520 125 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 CLVS2Q5SYC1 327 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 LRRN1Q6UXK5 716 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 ZNF550Q7Z398 422 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 Q8N2B8 174 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 PIGXQ8TBF5 258 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 LLPHQ9BRT6 129 aaKnown RBP0.77□□□□□ -2.29
SCN1A-206ENST00000491429 C3orf18Q9UK00 162 aa0.77□□□□□ -2.29
SCN1A-206ENST00000491429 ZFHX2Q9C0A1 2572 aaPredicted RBP0.76□□□□□ -2.29
SCN1A-206ENST00000491429 SETD5Q9C0A6 1442 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 ABCC11Q96J66 1382 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 TRBV10-2A0A0K0K1G8 114 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 TMEM212A6NML5 194 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 SDCBPO00560 298 aaPredicted RBP0.76□□□□□ -2.29
SCN1A-206ENST00000491429 DEXIO95424 95 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 IGHV3-7P01780 117 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 PMP2P02689 132 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 IL9P15248 144 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 MAP3K7CLP57077 242 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 TPM4P67936 248 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 PRB3Q04118 309 aaPredicted RBP0.76□□□□□ -2.29
SCN1A-206ENST00000491429 DMTNQ08495 405 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 GID4Q8IVV7 300 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 RAB8BQ92930 207 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 HDHD2Q9H0R4 259 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 MED9Q9NWA0 146 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 RSL24D1Q9UHA3 163 aaKnown RBP0.76□□□□□ -2.29
SCN1A-206ENST00000491429 BAIAP2Q9UQB8 552 aa0.76□□□□□ -2.29
SCN1A-206ENST00000491429 EVC2Q86UK5 1308 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 C21orf140B9A014 251 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 NOS1APO75052 506 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-206ENST00000491429 KRT75O95678 551 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 FAM228BP0C875 321 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 MAGEA2P43356 314 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 SUPT4H1P63272 117 aaKnown RBP0.75□□□□□ -2.29
SCN1A-206ENST00000491429 RUNX1Q01196 453 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 RPL18Q07020 188 aaKnown RBP0.75□□□□□ -2.29
SCN1A-206ENST00000491429 PLCXD2Q0VAA5 305 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 NUMA1Q14980 2115 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 NDUFA5Q16718 116 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms