RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 DOCK3Q8IZD9 2030 aa13.93□□□□□ -0.18
COL7A1-210ENST00000487017 A0A087WV48 116 aa13.93□□□□□ -0.18
COL7A1-210ENST00000487017 PRR32B1ATL7 298 aa13.93□□□□□ -0.18
COL7A1-210ENST00000487017 SCN2AQ99250 2005 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 NPIPB6E9PJ23 425 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 GAS1P54826 345 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 PLP1P60201 277 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 ZNRF1Q8ND25 227 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 IL36BQ9NZH7 164 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 RAXQ9Y2V3 346 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 XIRP1Q702N8 1843 aaKnown RBP13.92□□□□□ -0.18
COL7A1-210ENST00000487017 LY6EQ16553 131 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 LCTP09848 1927 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 COX6CP09669 75 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 HBBP68871 147 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 SMAGPQ0VAQ4 97 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 VWCEQ96DN2 955 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 MTCL1Q9Y4B5 1905 aaKnown RBP13.92□□□□□ -0.18
COL7A1-210ENST00000487017 C17orf98A8MV24 154 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 REPIN1Q9BWE0 567 aaKnown RBP13.92□□□□□ -0.18
COL7A1-210ENST00000487017 TUBA4BQ9H853 241 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 GSN-AS1Q9NRJ2 163 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 FOXJ2Q9P0K8 574 aa13.92□□□□□ -0.18
COL7A1-210ENST00000487017 IGLV3-19P01714 112 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 LINC00305Q7Z4B0 112 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 MRPL13Q9BYD1 178 aaKnown RBP13.91□□□□□ -0.18
COL7A1-210ENST00000487017 SDF2L1Q9HCN8 221 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 F8VVB4 439 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 F8VWA3 439 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 CELA3AP09093 270 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 ATOH7Q8N100 152 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 SIGLEC12Q96PQ1 595 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 GFI1Q99684 422 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 F11RQ9Y624 299 aaKnown RBP13.91□□□□□ -0.18
COL7A1-210ENST00000487017 GOLT1AQ6ZVE7 132 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 FLVCR1-AS1Q8TAF5 88 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 SPOCK3Q9BQ16 436 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 MOB4Q9Y3A3 225 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 TDRD6O60522 2096 aaKnown RBP13.91□□□□□ -0.18
COL7A1-210ENST00000487017 CX3CL1P78423 397 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 TCF24Q7RTU0 167 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 ZNF525Q8N782 197 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 HIST1H4GQ99525 98 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 CLEC7AQ9BXN2 247 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 DICER1Q9UPY3 1922 aaKnown RBP13.91□□□□□ -0.18
COL7A1-210ENST00000487017 MPZP25189 248 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 LEMD1Q68G75 181 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 PHLDA3Q9Y5J5 127 aa13.91□□□□□ -0.18
COL7A1-210ENST00000487017 UCNP55089 124 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 ZNF837Q96EG3 531 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-210ENST00000487017 LOC285556D6RIA3 1793 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 GDF9O60383 454 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 MOSP00540 346 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 CABIN1Q9Y6J0 2220 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 CGAP01215 116 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 IGHV3-48P01763 117 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-210ENST00000487017 ZCCHC14Q8WYQ9 949 aaKnown RBP13.9□□□□□ -0.18
COL7A1-210ENST00000487017 IFI27L2Q9H2X8 130 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 CCL1P22362 96 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 CHD5Q8TDI0 1954 aa13.9□□□□□ -0.18
COL7A1-210ENST00000487017 COX6B1P14854 86 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 HOXA5P20719 270 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 GPX4P36969 197 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-210ENST00000487017 FAM74A4Q5TZK3 123 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 PEAR1Q5VY43 1037 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-210ENST00000487017 DNM1P46Q6ZS02 220 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 PMCHL2Q9BQD1 86 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 TMEM70Q9BUB7 260 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 DPRXA6NFQ7 191 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 SRSF3P84103 164 aaKnown RBP13.89□□□□□ -0.19
COL7A1-210ENST00000487017 IGHV3OR16-10A0A075B7F0 116 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 SCO2A0A1W2PP80 73 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 IGFBP2P18065 325 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 GCSAMLQ5JQS6 135 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 OR13A1Q8NGR1 328 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 OSR1Q8TAX0 266 aaPredicted RBP13.89□□□□□ -0.19
COL7A1-210ENST00000487017 FGF16O43320 207 aa13.89□□□□□ -0.19
COL7A1-210ENST00000487017 LGALS3P17931 250 aaKnown RBP13.89□□□□□ -0.19
COL7A1-210ENST00000487017 A0A0G2JMM0 328 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 A0A1W2PPB8 328 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 A0A1W2PRS3 328 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 KIR3DP1A8MWS1 328 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 SLC17A3O00476 420 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 DLX6P56179 175 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 RP1P56715 2156 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 GLRXP35754 106 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 ATP5G3P48201 142 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 IGHV3-35A0A0C4DH35 117 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 IGKV1-9A0A0C4DH69 117 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 IGHV1-69-2A0A0G2JMI3 117 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 NPIPB11E5RHQ5 1161 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 IGKV3-20P01619 116 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 RELQ04864 619 aaPredicted RBP13.88□□□□□ -0.19
COL7A1-210ENST00000487017 LYZL4Q96KX0 146 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 RNF115Q9Y4L5 304 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 H0YIZ8 118 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 RAB9AP51151 201 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 ERASQ7Z444 233 aa13.88□□□□□ -0.19
COL7A1-210ENST00000487017 BEX4Q9NWD9 120 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms