RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PDCD6O75340 191 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 SERPINB7O75635 380 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR2J2O76002 312 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 YIF1AO95070 293 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 TTRP02766 147 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 PFN1P07737 140 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 FBP1P09467 338 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 COX4I1P13073 169 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 MUC1P15941 1255 aaPredicted RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 NELFEP18615 380 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 RAB3BP20337 219 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 S100PP25815 95 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 AGTR1P30556 359 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 S100A7P31151 101 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 SDC4P31431 198 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 AKR1C3P42330 323 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 LGALS7P47929 136 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 NDUFA8P51970 172 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 HSPE1P61604 102 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 DEFA6Q01524 100 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 INCA1Q0VD86 236 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 TCP10Q12799 353 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 EBPQ15125 230 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 PMVKQ15126 192 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 TMEM128Q5BJH2 165 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 N4BP2L1Q5TBK1 243 aaPredicted RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 SPATA31B1PQ5VZV4 182 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 NANOGP8Q6NSW7 305 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 LPCAT3Q6P1A2 487 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 SCGB1D4Q6XE38 83 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 DGAT2L6Q6ZPD8 337 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 TMPPEQ6ZT21 453 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 C3orf62Q6ZUJ4 267 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 TCF24Q7RTU0 167 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 ZNF550Q7Z398 422 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OOSP2Q86WS3 158 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 DOLPP1Q86YN1 238 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR4M1Q8NGD0 313 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR52L1Q8NGH7 329 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR9I1Q8NGQ6 314 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR2K2Q8NGT1 345 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR5J2Q8NH18 312 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 OR1S1Q8NH92 325 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 ZNRF2Q8NHG8 242 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 ZNF420Q8TAQ5 688 aaPredicted RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 FAM3DQ96BQ1 224 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 RMI2Q96E14 147 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 SEH1LQ96EE3 360 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 L3HYPDHQ96EM0 354 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 MRPL48Q96GC5 212 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 SMIM8Q96KF7 97 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 DNAJC30Q96LL9 226 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 PPP1R2P1Q96PQ5 205 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 GPER1Q99527 375 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 C12orf57Q99622 126 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 C1orf50Q9BV19 199 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 CCDC90BQ9GZT6 254 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 ZNF629Q9UEG4 869 aaPredicted RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 PKIGQ9Y2B9 76 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 COL6A6A6NMZ7 2263 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 CRYBG3Q68DQ2 2970 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 A0A0J9YXV3 536 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 MAP1LC3B2A6NCE7 125 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PGPA6NDG6 321 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 C5orf58C9J3I9 102 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 E7EQ34 232 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 G3V2T6 193 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 UPK2O00526 184 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 DLEU1O43261 78 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 ORC5O43913 435 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PFDN1O60925 122 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 GCM2O75603 506 aaPredicted RBP1.88□□□□□ -2.11
VPS41-213ENST00000485955 ARL6IP5O75915 188 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 OR2A4O95047 310 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PDYNP01213 254 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 ATP5G1P05496 136 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 HTR1AP08908 422 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 OR4A8P0C604 315 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 SMIM6P0DI80 62 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 GPX2P18283 190 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PRSS3P35030 304 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 CA5AP35218 305 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PSMB2P49721 201 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 TPI1P60174 286 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 GTF2BQ00403 316 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 CDK5Q00535 292 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PRDX4Q13162 271 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PMAIP1Q13794 54 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 C1DQ13901 141 aaKnown RBP1.88□□□□□ -2.11
VPS41-213ENST00000485955 BATFQ16520 125 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 GUCA2BQ16661 112 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 PLPPR5Q32ZL2 321 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 C1orf194Q5T5A4 169 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 HENMT1Q5T8I9 393 aaKnown RBP1.88□□□□□ -2.11
VPS41-213ENST00000485955 KDM4DQ6B0I6 523 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 LCN12Q6JVE5 192 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 DCUN1D2Q6PH85 259 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 C4orf22Q6V702 233 aa1.88□□□□□ -2.11
VPS41-213ENST00000485955 ZCCHC24Q8N2G6 241 aaKnown RBP1.88□□□□□ -2.11
VPS41-213ENST00000485955 OSR2Q8N2R0 312 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms