RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 OR2T4Q8NH00 348 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 ACOT12Q8WYK0 555 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 RAB8BQ92930 207 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 ERMAPQ96PL5 475 aaPredicted RBP0.41□□□□□ -2.34
VPS50-216ENST00000484954 CISHQ9NSE2 258 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 AK3Q9UIJ7 227 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 TONSLQ96HA7 1378 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 SCAF11Q99590 1463 aaKnown RBP0.41□□□□□ -2.34
VPS50-216ENST00000484954 SLX4Q8IY92 1834 aa0.41□□□□□ -2.34
VPS50-216ENST00000484954 NUP160Q12769 1436 aa0.4□□□□□ -2.34
VPS50-216ENST00000484954 IGKV2-40A0A087WW87 121 aaPredicted RBP0.4□□□□□ -2.35
VPS50-216ENST00000484954 IGHV1-69-2A0A0G2JMI3 117 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 TRAPPC13A5PLN9 417 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 H0Y980 276 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 SSNA1O43805 119 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 DEXIO95424 95 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 IGKV2D-40P01614 121 aaPredicted RBP0.4□□□□□ -2.35
VPS50-216ENST00000484954 HLA-DMBP28068 263 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 MAGEA2P43356 314 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 CSN1S1P47710 185 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 MAP3K7CLP57077 242 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 DMTNQ08495 405 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 RSU1Q15404 277 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 GUK1Q16774 197 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 CLVS2Q5SYC1 327 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 FAM27BQ5VT28 67 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 LRRN1Q6UXK5 716 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 DEFB125Q8N687 156 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 RNF133Q8WVZ7 376 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 TMA16Q96EY4 203 aaKnown RBP0.4□□□□□ -2.35
VPS50-216ENST00000484954 XAGE1AQ9HD64 81 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 XPNPEP1Q9NQW7 623 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 RSL24D1Q9UHA3 163 aaKnown RBP0.4□□□□□ -2.35
VPS50-216ENST00000484954 C3orf18Q9UK00 162 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 ATP6V1DQ9Y5K8 247 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 KIF24Q5T7B8 1368 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 ABCC11Q96J66 1382 aa0.4□□□□□ -2.35
VPS50-216ENST00000484954 KDM5BQ9UGL1 1544 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 TECTAO75443 2155 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 CHD2O14647 1828 aaKnown RBP0.39□□□□□ -2.35
VPS50-216ENST00000484954 MICAL3Q7RTP6 2002 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 A0A0A6YYH2 397 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 TRBV10-2A0A0K0K1G8 114 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 MEIS3P1A6NDR6 274 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 A6NJ64 397 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 DISC1C4P0D8 188 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 CRPP02741 224 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 PPBPP02775 128 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 CLPSP04118 112 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 TRGC1P0CF51 173 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 MSNP26038 577 aaKnown RBP0.39□□□□□ -2.35
VPS50-216ENST00000484954 S100A7P31151 101 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 RAB13P51153 203 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 EMP1P54849 157 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 OR4D2P58180 307 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 NAA20P61599 178 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 SUPT4H1P63272 117 aaKnown RBP0.39□□□□□ -2.35
VPS50-216ENST00000484954 EMX1Q04741 257 aaPredicted RBP0.39□□□□□ -2.35
VPS50-216ENST00000484954 RPL18Q07020 188 aaKnown RBP0.39□□□□□ -2.35
VPS50-216ENST00000484954 DHFR2Q86XF0 187 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 GID4Q8IVV7 300 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 FAM9CQ8IZT9 166 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 TMEM86BQ8N661 226 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 ZNF676Q8N7Q3 588 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 OR5B17Q8NGF7 314 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 OR8B3Q8NGG8 313 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 PIGXQ8TBF5 258 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 ANKRD7Q92527 254 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 KLK6Q92876 244 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 TESCQ96BS2 214 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 DIRAS2Q96HU8 199 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 OR51I2Q9H344 312 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 PAQR5Q9NXK6 330 aaPredicted RBP0.39□□□□□ -2.35
VPS50-216ENST00000484954 BAIAP2Q9UQB8 552 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 PIK3R4Q99570 1358 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 REREQ9P2R6 1566 aa0.39□□□□□ -2.35
VPS50-216ENST00000484954 IGKV3D-7A0A0C4DH55 119 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 IGKV3OR2-268A0A0C4DH90 116 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 F8W036 122 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 M0QZ92 97 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 CETN3O15182 167 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 SLC16A4O15374 487 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 TGOLN2O43493 480 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 ORC5O43913 435 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 YEATS4O95619 227 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 IGHV3-7P01780 117 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 C1QAP02745 245 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 RPSAP08865 295 aaKnown RBP0.38□□□□□ -2.35
VPS50-216ENST00000484954 SRP19P09132 144 aaKnown RBP0.38□□□□□ -2.35
VPS50-216ENST00000484954 SULT1A3P0DMM9 295 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 SULT1A4P0DMN0 295 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 FGF6P10767 208 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 RNASE3P12724 160 aaKnown RBP0.38□□□□□ -2.35
VPS50-216ENST00000484954 MARCKSL1P49006 195 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 FXYD2P54710 66 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 RAB5BP61020 215 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 AP1S1P61966 158 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 HIST1H4AP62805 103 aaKnown RBP0.38□□□□□ -2.35
VPS50-216ENST00000484954 FABP9Q0Z7S8 132 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 PMAIP1Q13794 54 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms