RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 PIGBOS1A0A0B4J2F0 54 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 M0R1X1 148 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 ARPC1BO15143 372 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 GGCTO75223 188 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 PROP1O75360 226 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 NDUFA7O95182 113 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 IGKV1D-33P01593 117 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 IGKV1-33P01594 117 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 AMY2AP04746 511 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 SNRNP70P08621 437 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 PET100P0DJ07 73 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 TMEM11P17152 192 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 ANXA7P20073 488 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 DUTP33316 252 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 SNRPEP62304 92 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 DLK1P80370 383 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 FOXL1Q12952 345 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 DIAPH2-AS1Q14236 149 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 HES1Q14469 280 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 RHEBQ15382 184 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 RTL8BQ17RB0 113 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 RPL39P5Q59GN2 51 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 RNASE12Q5GAN4 147 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 FAM53AQ6NSI3 398 aaPredicted RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 ETV3LQ6ZN32 361 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 OSR1Q8TAX0 266 aaPredicted RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 RXFP4Q8TDU9 374 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 SECTM1Q8WVN6 248 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 FLYWCH2Q96CP2 140 aaKnown RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 EAF1Q96JC9 268 aaPredicted RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 RSRP1Q9BUV0 290 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 TINAGL1Q9GZM7 467 aaPredicted RBP6.62□□□□□ -1.35
USP54-212ENST00000480210 NPFFR1Q9GZQ6 430 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 ESM1Q9NQ30 184 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 SLC35D1Q9NTN3 355 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 MOB4Q9Y3A3 225 aa6.62□□□□□ -1.35
USP54-212ENST00000480210 IGKV1D-13A0A0B4J2D9 117 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 C9orf170A2RU37 121 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 SEC14L6B5MCN3 397 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 H0YJW9 148 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 M0QYG6 137 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 RBFOX2O43251 390 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP54-212ENST00000480210 GPR137BO60478 399 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 SPDEFO95238 335 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 ZNF735P0CB33 412 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 IGKV1-13P0DP09 117 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 GNRHRP30968 328 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 GPX4P36969 197 aaPredicted RBP6.61□□□□□ -1.35
USP54-212ENST00000480210 REG1BP48304 166 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 FXYD4P59646 89 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 RND3P61587 244 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 FABP9Q0Z7S8 132 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 HAGHQ16775 308 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 TMEM177Q53S58 311 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 ATRAIDQ6UW56 229 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 KCTD9Q7L273 389 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 PRIMA1Q86XR5 153 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 Q8N6K4 173 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 CCDC71LQ8N9Z2 235 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 NPBQ8NG41 125 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 OR4C16Q8NGL9 310 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 RRNAD1Q96FB5 475 aaKnown RBP6.61□□□□□ -1.35
USP54-212ENST00000480210 SLC25A33Q9BSK2 321 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 MRPL20Q9BYC9 149 aaKnown RBP6.61□□□□□ -1.35
USP54-212ENST00000480210 CHIAQ9BZP6 476 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 PRSS22Q9GZN4 317 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 PARP12Q9H0J9 701 aaKnown RBP6.61□□□□□ -1.35
USP54-212ENST00000480210 CCL28Q9NRJ3 127 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 UQCC1Q9NVA1 299 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 GAR1Q9NY12 217 aaKnown RBP6.61□□□□□ -1.35
USP54-212ENST00000480210 KIAA1456Q9P272 454 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 MMP24Q9Y5R2 645 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 ZFHX3Q15911 3703 aa6.61□□□□□ -1.35
USP54-212ENST00000480210 JMJD1CQ15652 2540 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 TMEM89A2RUT3 159 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 FAM181BA6NEQ2 426 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 COLCA2A8K830 154 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 PGLYRP1O75594 196 aaPredicted RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 HPRT1P00492 218 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 HRASP01112 189 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 IGLV2-14P01704 120 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 CTSDP07339 412 aaPredicted RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 PGAM2P15259 253 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 HIST1H1BP16401 226 aaKnown RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 CDX1P47902 265 aaPredicted RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 CAV2P51636 162 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 CCR6P51684 374 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 UBE2MP61081 183 aaKnown RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 RPS16P62249 146 aaKnown RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 EIF4EBP1Q13541 118 aaPredicted RBP6.6□□□□□ -1.35
USP54-212ENST00000480210 LY6EQ16553 131 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 SCGB2B2Q4G0G5 96 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 ABCA11PQ4W5N1 156 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 AADACL3Q5VUY0 350 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 C11orf87Q6NUJ2 197 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 ZNF818PQ6ZRF7 136 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 ZNF383Q8NA42 475 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 OR4F5Q8NH21 305 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 OR4S2Q8NH73 311 aa6.6□□□□□ -1.35
USP54-212ENST00000480210 VSTM2AQ8TAG5 236 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms