RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ACSM3Q53FZ2 586 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 FAM201AQ5SY85 155 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 TMEM42Q69YG0 159 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 DYNAPQ8N1N2 210 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 ZNF563Q8TA94 476 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 SLC7A6Q92536 515 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 ROPN1LQ96C74 230 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 DOHHQ9BU89 302 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 SPZ1Q9BXG8 430 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 PARD6GQ9BYG4 376 aaPredicted RBP0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 MRPS26Q9BYN8 205 aaKnown RBP0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 OR8D2Q9GZM6 311 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 PAQR5Q9NXK6 330 aaPredicted RBP0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 NAT8Q9UHE5 227 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 ANGPT4Q9Y264 503 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 TIMM22Q9Y584 194 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 MAST2Q6P0Q8 1798 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 DCCP43146 1447 aa0.97□□□□□ -2.25
CCDC88A-212ENST00000474059 CR1P17927 2039 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 SORL1Q92673 2214 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 GREB1Q4ZG55 1949 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 TRGV2A0A075B6R0 118 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 A0A0D9SEW6 157 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 HMSDA8MTL9 139 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 ZNF737O75373 536 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 MSMBP08118 114 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 SRP19P09132 144 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 FAM228BP0C875 321 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 MSNP26038 577 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 HLA-DMBP28068 263 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 S100A7P31151 101 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 NKX2-5P52952 324 aaPredicted RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 OR4D2P58180 307 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 CAV1Q03135 178 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 C9orf64Q5T6V5 341 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 PTRHD1Q6GMV3 140 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 ALKAL1Q6UXT8 129 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 C10orf126Q8N4M7 172 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 OR1M1Q8NGA1 313 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 OR2T4Q8NH00 348 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 ACOT12Q8WYK0 555 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 ANKRD7Q92527 254 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 CNBD2Q96M20 576 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 HSPB9Q9BQS6 159 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 FAM96AQ9H5X1 160 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 C8orf4Q9NR00 106 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 DOK5Q9P104 306 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 GUCA1BQ9UMX6 200 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 FUT9Q9Y231 359 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 LSM5Q9Y4Y9 91 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 SCAF11Q99590 1463 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 MDC1Q14676 2089 aaKnown RBP0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 PTPRBP23467 1997 aa0.96□□□□□ -2.26
CCDC88A-212ENST00000474059 RALGAPA2Q2PPJ7 1873 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 TGIF2-C20orf24A0A0A6YYL0 155 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 TRAPPC2LH3BP13 241 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 CIAO1O76071 339 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 TNNC2P02585 160 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 SERPINA7P05543 415 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 ZNF705DP0CH99 300 aaPredicted RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 ZNF705BP0CI00 300 aaPredicted RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 HIST1H1EP10412 219 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 KCNE1P15382 129 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 GPX2P18283 190 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 EVX1P49640 407 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 HIST1H4AP62805 103 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 PMAIP1Q13794 54 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 FAM27BQ5VT28 67 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 LPCAT4Q643R3 524 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 GLT8D1Q68CQ7 371 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 C8orf74Q6P047 294 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 SLC36A1Q7Z2H8 476 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 C1orf158Q8N1D5 194 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 RPP25LQ8N5L8 163 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 TMEM86BQ8N661 226 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 OR5B17Q8NGF7 314 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 KLK6Q92876 244 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 SLC35B4Q969S0 331 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 MRPL32Q9BYC8 188 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 CHST6Q9GZX3 395 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 PARVGQ9HBI0 331 aa0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 RSL24D1Q9UHA3 163 aaKnown RBP0.95□□□□□ -2.26
CCDC88A-212ENST00000474059 AHNAK2Q8IVF2 5795 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 SMARCA4P51532 1647 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 A0A0J9YY10 115 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 A0A1B0GV50 99 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 A0A1B0GX78 115 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 GGT3PA6NGU5 568 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 OR51F1A6NGY5 319 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 EEF1E1-BLOC1S5C9J1V9 151 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 KCNK1O00180 336 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 AHSA1O95433 338 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 OR5G3P0C626 314 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 FGF6P10767 208 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 MAGEA12P43365 314 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 IFITM2Q01629 132 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 OR2F1Q13607 317 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 HIST3H3Q16695 136 aa0.94□□□□□ -2.26
CCDC88A-212ENST00000474059 GUK1Q16774 197 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms