RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 OR9G4Q8NGQ1 327 aa13.7□□□□□ -0.22
UPF3A-203ENST00000474056 CD300LFQ8TDQ1 290 aa13.7□□□□□ -0.22
UPF3A-203ENST00000474056 FANCD2OSQ96PS1 177 aa13.7□□□□□ -0.22
UPF3A-203ENST00000474056 COMMD9Q9P000 198 aa13.7□□□□□ -0.22
UPF3A-203ENST00000474056 EXTL2Q9UBQ6 330 aa13.7□□□□□ -0.22
UPF3A-203ENST00000474056 HUWE1Q7Z6Z7 4374 aaKnown RBP13.69□□□□□ -0.22
UPF3A-203ENST00000474056 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.69□□□□□ -0.22
UPF3A-203ENST00000474056 IGLV1-51P01701 117 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 REG1AP05451 166 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 CRYGCP07315 174 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 CTRB1P17538 263 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 F2RP25116 425 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 PSMB6P28072 239 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 OR2B8PP59922 312 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 SPCS2Q15005 226 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 CTRB2Q6GPI1 263 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 IL34Q6ZMJ4 242 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 FCAMRQ8WWV6 532 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 FBXL7Q9UJT9 491 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 SMAD5-AS1Q9Y6J3 95 aa13.69□□□□□ -0.22
UPF3A-203ENST00000474056 MARCH11A6NNE9 402 aa13.68□□□□□ -0.22
UPF3A-203ENST00000474056 LPAR6P43657 344 aa13.68□□□□□ -0.22
UPF3A-203ENST00000474056 ZNF585BQ52M93 769 aa13.68□□□□□ -0.22
UPF3A-203ENST00000474056 PHLDA2Q53GA4 152 aa13.68□□□□□ -0.22
UPF3A-203ENST00000474056 CMTM1Q8IZ96 169 aa13.68□□□□□ -0.22
UPF3A-203ENST00000474056 DGCR14Q96DF8 476 aaKnown RBP13.68□□□□□ -0.22
UPF3A-203ENST00000474056 KLK11Q9UBX7 282 aa13.68□□□□□ -0.22
UPF3A-203ENST00000474056 PPP5D1E7EU14 171 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 M0QYG6 137 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 NDUFB8O95169 186 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 IGHV3-23P01764 117 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 ERVK-16P61578 105 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 CLVS1Q8IUQ0 354 aaPredicted RBP13.67□□□□□ -0.22
UPF3A-203ENST00000474056 OR52I2Q8NH67 350 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 ASCL2Q99929 193 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 COMMD5Q9GZQ3 224 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 MIXL1Q9H2W2 232 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 DMRT1Q9Y5R6 373 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 S4R3C0 116 aa13.67□□□□□ -0.22
UPF3A-203ENST00000474056 IGLC7A0M8Q6 106 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 CSN3P07498 182 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 G6PCP35575 357 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 TATDN3Q17R31 274 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 KLK9Q2XQG4 91 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 CCDC140Q96MF4 163 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 KLK9Q9UKQ9 250 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 NSG2Q9Y328 171 aa13.66□□□□□ -0.22
UPF3A-203ENST00000474056 IGLV11-55A0A075B6I3 123 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 DHFRP00374 187 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 KRASP01116 189 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 FGF2P09038 288 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 LPCAT3Q6P1A2 487 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 TBC1D26Q86UD7 250 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 LAX1Q8IWV1 398 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 OR10W1Q8NGF6 305 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 ABHD1Q96SE0 405 aa13.65□□□□□ -0.22
UPF3A-203ENST00000474056 CTDSP2O14595 271 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 HLA-AP01891 365 aaKnown RBP13.64□□□□□ -0.23
UPF3A-203ENST00000474056 CD3DP04234 171 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 NHLRC4P0CG21 123 aaPredicted RBP13.64□□□□□ -0.23
UPF3A-203ENST00000474056 DEFA4P12838 97 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 HIST1H1BP16401 226 aaKnown RBP13.64□□□□□ -0.23
UPF3A-203ENST00000474056 UCP3P55916 312 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 SLC38A6Q8IZM9 456 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 QTRT1Q9BXR0 403 aaKnown RBP13.64□□□□□ -0.23
UPF3A-203ENST00000474056 SIGLEC8Q9NYZ4 499 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 PEMTQ9UBM1 199 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 MTFP1Q9UDX5 166 aa13.64□□□□□ -0.23
UPF3A-203ENST00000474056 TEX50A0A1B0GTY4 177 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 MFSD2BA6NFX1 497 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 RGS5O15539 181 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 S100GP29377 79 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 RNASE10Q5GAN6 216 aaKnown RBP13.63□□□□□ -0.23
UPF3A-203ENST00000474056 FAM209BQ5JX69 171 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 CLEC19AQ6UXS0 136 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 RAB2BQ8WUD1 216 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 EEF1AKMT3Q96AZ1 226 aa13.63□□□□□ -0.23
UPF3A-203ENST00000474056 SRSF8Q9BRL6 282 aaKnown RBP13.63□□□□□ -0.23
UPF3A-203ENST00000474056 GGCTO75223 188 aaKnown RBP13.62□□□□□ -0.23
UPF3A-203ENST00000474056 TPPPO94811 219 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 OR2C1O95371 312 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 IGKV1-39P01597 117 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 IGKV1D-39P04432 117 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 IFNA6P05013 189 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 TRAPPC2P0DI81 140 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 TRAPPC2BP0DI82 140 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 EDN2P20800 178 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 ARL3P36405 182 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 THOC7Q6I9Y2 204 aaKnown RBP13.62□□□□□ -0.23
UPF3A-203ENST00000474056 ADAMTSL5Q6ZMM2 481 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 LHFPL1Q86WI0 220 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 Q8N1Y9 231 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 OR4D10Q8NGI6 311 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 OR1L8Q8NGR8 309 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 DYNC2LI1Q8TCX1 351 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 NDUFA4L2Q9NRX3 87 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 FAM212BQ9NTI7 297 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-203ENST00000474056 OR51B2Q9Y5P1 312 aa13.62□□□□□ -0.23
UPF3A-203ENST00000474056 IZUMO1RA6ND01 250 aa13.61□□□□□ -0.23
UPF3A-203ENST00000474056 DBX1A6NMT0 343 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms