RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 SHISA6Q6ZSJ9 500 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 LINC00173Q6ZV60 143 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 DTX1Q86Y01 620 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 TMEM116Q8NCL8 245 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 VSTM2AQ8TAG5 236 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 LSM10Q969L4 123 aaKnown RBP3.54□□□□□ -1.84
VPS50-210ENST00000471188 MRPL13Q9BYD1 178 aaKnown RBP3.54□□□□□ -1.84
VPS50-210ENST00000471188 PNRC2Q9NPJ4 139 aaKnown RBP3.54□□□□□ -1.84
VPS50-210ENST00000471188 V9GYV3 84 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 F5P12259 2224 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 SDK1Q7Z5N4 2213 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 LOC102723996A0A087X1L8 192 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 PIGBOS1A0A0B4J2F0 54 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 KIR2DS1A0A191URI9 304 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 PRSS38A1L453 326 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 HELTA6NFD8 242 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 C2orf70A6NJV1 201 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 TMEM150CB9EJG8 249 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 SYS1-DBNDD2H3BUS1 97 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 CLEC3BP05452 202 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 CELA3AP09093 270 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 IGFBP2P18065 325 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 SPINK2P20155 84 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 GDF1P27539 372 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 KIR2DS4P43632 304 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 KIR2DS1Q14954 304 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 OR8B8Q15620 311 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 TBR1Q16650 682 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 IBA57Q5T440 356 aaKnown RBP3.54□□□□□ -1.84
VPS50-210ENST00000471188 ASCL4Q6XD76 172 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 MRPL21Q7Z2W9 205 aaKnown RBP3.54□□□□□ -1.84
VPS50-210ENST00000471188 NHLRC2Q8NBF2 726 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 GJC3Q8NFK1 279 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 OR5A1Q8NGJ0 315 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 MRAP2Q96G30 205 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 C19orf24Q9BVV8 132 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 STRADBQ9C0K7 418 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 TNFRSF19Q9NS68 423 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 IL36RNQ9UBH0 155 aa3.54□□□□□ -1.84
VPS50-210ENST00000471188 A0A0J9YY10 115 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 F2RL2O00254 374 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 TLX3O43711 291 aaPredicted RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 ZG16O60844 167 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 IGKV1-5P01602 117 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 HBZP02008 142 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 CYBAP13498 195 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 PTGDSP41222 190 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 RBM11P57052 281 aaKnown RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 ZNF816Q0VGE8 651 aaPredicted RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 CEACAM16Q2WEN9 425 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 ADAMTSL5Q6ZMM2 481 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 C16orf47Q6ZP98 133 aaPredicted RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 SFTPA2Q8IWL1 248 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 SPACA3Q8IXA5 215 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 OR1L3Q8NH93 324 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 SSMEM1Q8WWF3 244 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 SPTSSAQ969W0 71 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 MAP1LC3CQ9BXW4 147 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 URB1O60287 2271 aaKnown RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 ANKRD30BLA7E2S9 258 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 H0Y8X5 98 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 H3BRM9 83 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 TNFSF14O43557 240 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 ACTL6BO94805 426 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 CXorf1O96002 111 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 IGKV1-39P01597 117 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 HLA-DRB1P01911 266 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 IGKV1D-39P04432 117 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 CA3P07451 260 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 HNRNPA1P09651 372 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS50-210ENST00000471188 DRD3P35462 400 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 CEBPDP49716 269 aaPredicted RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 HERV-K104P63124 156 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 CST6Q15828 149 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 PSG3Q16557 428 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 VWC2Q2TAL6 325 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 PEAR1Q5VY43 1037 aaPredicted RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 MIC13Q5XKP0 118 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 TRAT1Q6PIZ9 186 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 TMEM14EPQ6UXP3 125 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS50-210ENST00000471188 LHFPL2Q6ZUX7 228 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 FA2HQ7L5A8 372 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 FGFRL1Q8N441 504 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 TPRX1Q8N7U7 411 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 ZNF611Q8N823 705 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 FLVCR1-AS1Q8TAF5 88 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 BMFQ96LC9 184 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 TRIB1Q96RU8 372 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 PLEKHA3Q9HB20 300 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 SLC17A4Q9Y2C5 497 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 ZNF257Q9Y2Q1 563 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 OR2W1Q9Y3N9 320 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 YTHDF2Q9Y5A9 579 aaKnown RBP3.53□□□□□ -1.84
VPS50-210ENST00000471188 ZNF318Q5VUA4 2279 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 FAM186AA6NE01 2351 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 A0A1W2PPM0 123 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 PSMB11A5LHX3 300 aa3.53□□□□□ -1.84
VPS50-210ENST00000471188 FRG2CA6NGY1 282 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms