RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RPL8P62917 257 aaKnown RBP13.82□□□□□ -0.2
COL7A1-205ENST00000465238 SSBP2P81877 361 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-205ENST00000465238 TMEM65Q6PI78 240 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 MINDY2Q8NBR6 621 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 SLC25A21Q9BQT8 299 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-205ENST00000465238 MCRIP2Q9BUT9 160 aaKnown RBP13.82□□□□□ -0.2
COL7A1-205ENST00000465238 TMEM140Q9NV12 185 aa13.82□□□□□ -0.2
COL7A1-205ENST00000465238 FOXA2Q9Y261 457 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-205ENST00000465238 A0A1W2PN81 502 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 WI2-2373I1.2A0A1W2PRP0 233 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 UPK2O00526 184 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 CD40LGP29965 261 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 G6PCP35575 357 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 CHRNA7P36544 502 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 ZNF846Q147U1 533 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 DEFB121Q5J5C9 76 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 SRSF12Q8WXF0 261 aaKnown RBP13.81□□□□□ -0.2
COL7A1-205ENST00000465238 TMEM68Q96MH6 324 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 TP53RKQ96S44 253 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 C7orf50Q9BRJ6 194 aaKnown RBP13.81□□□□□ -0.2
COL7A1-205ENST00000465238 CCDC32Q9BV29 185 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 NAA60Q9H7X0 242 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 VSIG4Q9Y279 399 aa13.81□□□□□ -0.2
COL7A1-205ENST00000465238 NUDT19A8MXV4 375 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 ATG12O94817 140 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 HLA-GP17693 338 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 HOXD3P31249 432 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-205ENST00000465238 MYCNOSP40205 109 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 RPL27AP46776 148 aaKnown RBP13.8□□□□□ -0.2
COL7A1-205ENST00000465238 TRIM16LQ309B1 348 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 SP6Q3SY56 376 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 C19orf54Q5BKX5 351 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 C8orf86Q6ZUL3 223 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 SGPP2Q8IWX5 399 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 OR5M8Q8NGP6 311 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 SPIN2AQ99865 258 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 SPIN2BQ9BPZ2 258 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 WDR12Q9GZL7 423 aaKnown RBP13.8□□□□□ -0.2
COL7A1-205ENST00000465238 KCNIP3Q9Y2W7 256 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 NBEAL2Q6ZNJ1 2754 aa13.8□□□□□ -0.2
COL7A1-205ENST00000465238 TRAV3A0A0B4J244 114 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 CRYM-AS1A6NIL9 109 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 SNAPC5O75971 98 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 IGLV1-40P01703 118 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 RPLP1P05386 114 aaKnown RBP13.79□□□□□ -0.2
COL7A1-205ENST00000465238 IL6RP08887 468 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-205ENST00000465238 AKR1C4P17516 323 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 PSMB8P28062 276 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 DHODHQ02127 395 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 C10orf55Q5SWW7 151 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 H2BFWTQ7Z2G1 175 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 CADM3Q8N126 398 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 ADAD2Q8NCV1 583 aaKnown RBP13.79□□□□□ -0.2
COL7A1-205ENST00000465238 KLHL30-AS1Q8NEE0 82 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 OR5T1Q8NG75 326 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 COMMD5Q9GZQ3 224 aa13.79□□□□□ -0.2
COL7A1-205ENST00000465238 TENM3Q9P273 2699 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 IGKV1-39P01597 117 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 IGKV1D-39P04432 117 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 OR5AC1P0C628 307 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 UCP1P25874 307 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 CCR6P51684 374 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 RBMS2Q15434 407 aaKnown RBP13.78□□□□□ -0.2
COL7A1-205ENST00000465238 LCNL1Q6ZST4 164 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 C18orf65Q6ZTR6 163 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 TMED4Q7Z7H5 227 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 ZNF695Q8IW36 515 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 RNF152Q8N8N0 203 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 SEC22AQ96IW7 307 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 FYTTD1Q96QD9 318 aaKnown RBP13.78□□□□□ -0.2
COL7A1-205ENST00000465238 P2RX4Q99571 388 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 TSC22D3Q99576 134 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 TMEM222Q9H0R3 208 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 ZNF355PQ9NSJ1 428 aa13.78□□□□□ -0.2
COL7A1-205ENST00000465238 ZMAT5Q9UDW3 170 aaKnown RBP13.78□□□□□ -0.2
COL7A1-205ENST00000465238 SOX15O60248 233 aa13.77□□□□□ -0.21
COL7A1-205ENST00000465238 FGF2P09038 288 aa13.77□□□□□ -0.21
COL7A1-205ENST00000465238 APELAP0DMC3 54 aa13.77□□□□□ -0.21
COL7A1-205ENST00000465238 RAB9AP51151 201 aa13.77□□□□□ -0.21
COL7A1-205ENST00000465238 DCTN2Q13561 401 aaKnown RBP13.77□□□□□ -0.21
COL7A1-205ENST00000465238 TMEM230Q96A57 120 aa13.77□□□□□ -0.21
COL7A1-205ENST00000465238 KLK15Q9H2R5 256 aa13.77□□□□□ -0.21
COL7A1-205ENST00000465238 DNAH9Q9NYC9 4486 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 OR9G9P0C7N8 305 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 ANXA3P12429 323 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 MYOD1P15172 320 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 AKR1C2P52895 323 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 ASPHD1Q5U4P2 390 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 SLC25A42Q86VD7 318 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 OR4A16Q8NH70 328 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 RNASE11Q8TAA1 199 aaKnown RBP13.76□□□□□ -0.21
COL7A1-205ENST00000465238 GLYATL2Q8WU03 294 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 MS4A10Q96PG2 267 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 COA4Q9NYJ1 87 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 FKBP11Q9NYL4 201 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 PRNDQ9UKY0 176 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 NSG2Q9Y328 171 aa13.76□□□□□ -0.21
COL7A1-205ENST00000465238 HMX3A6NHT5 357 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 PLA2G10O15496 165 aa13.75□□□□□ -0.21
COL7A1-205ENST00000465238 LYRM1O43325 122 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms