RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 OPN1MWP04001 364 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 S100A9P06702 114 aaKnown RBP12.34□□□□□ -0.43
LDLR-202ENST00000455727 PPIAL4FP0DN26 164 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 OPN1MW2P0DN77 364 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 OPN1MW3P0DN78 364 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 NPY1RP25929 384 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 ZNF833PQ6ZTB9 187 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 OR4F5Q8NH21 305 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 OR4F4Q96R69 305 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 PPIAL4AQ9Y536 164 aa12.34□□□□□ -0.43
LDLR-202ENST00000455727 A0A1W2PPV4 95 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 TNFRSF13BO14836 293 aaPredicted RBP12.33□□□□□ -0.44
LDLR-202ENST00000455727 PAGE4O60829 102 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 ATP5IP56385 69 aaPredicted RBP12.33□□□□□ -0.44
LDLR-202ENST00000455727 RPL31P62899 125 aaKnown RBP12.33□□□□□ -0.44
LDLR-202ENST00000455727 RBPJQ06330 500 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 FOXC1Q12948 553 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 NANPQ8TBE9 248 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 GATAD1Q8WUU5 269 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 NEIL1Q96FI4 390 aaPredicted RBP12.33□□□□□ -0.44
LDLR-202ENST00000455727 TCEAL7Q9BRU2 100 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 PARLQ9H300 379 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 SLC35D1Q9NTN3 355 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 SH3BGRL2Q9UJC5 107 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 OR51B2Q9Y5P1 312 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 ATMQ13315 3056 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 TRBV24-1A0A075B6N3 115 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 UPK2O00526 184 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 ZCCHC24Q8N2G6 241 aaKnown RBP12.33□□□□□ -0.44
LDLR-202ENST00000455727 RND1Q92730 232 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 WFIKKN1Q96NZ8 548 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 FKBP11Q9NYL4 201 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 PXMP4Q9Y6I8 212 aa12.33□□□□□ -0.44
LDLR-202ENST00000455727 KIAA0141Q14154 515 aaPredicted RBP12.32□□□□□ -0.44
LDLR-202ENST00000455727 ZNF674Q2M3X9 581 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 BSXQ3C1V8 233 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 RNASE6Q93091 150 aaKnown RBP12.32□□□□□ -0.44
LDLR-202ENST00000455727 RPUSD4Q96CM3 377 aaKnown RBP12.32□□□□□ -0.44
LDLR-202ENST00000455727 C1orf159Q96HA4 380 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 ZNF714Q96N38 554 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 BET1LQ9NYM9 111 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 PDE6DO43924 150 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 VENTXO95231 258 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 RPL23P62829 140 aaKnown RBP12.32□□□□□ -0.44
LDLR-202ENST00000455727 PRCDQ00LT1 54 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 ARSJQ5FYB0 599 aaPredicted RBP12.32□□□□□ -0.44
LDLR-202ENST00000455727 GCSAMLQ5JQS6 135 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 TMEM200BQ69YZ2 307 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 TEPPQ6URK8 271 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 SLC16A13Q7RTY0 426 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 C8orf31Q8N9H6 132 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 FAM210BQ96KR6 192 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 TXNDC17Q9BRA2 123 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 SCNM1Q9BWG6 230 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 TMEM106BQ9NUM4 274 aa12.32□□□□□ -0.44
LDLR-202ENST00000455727 PCNX1Q96RV3 2341 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 C11orf94C9JXX5 98 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 J3QR06 171 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 CA2P00918 260 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 DEFA4P12838 97 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 ADIRFQ15847 76 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 OSR1Q8TAX0 266 aaPredicted RBP12.31□□□□□ -0.44
LDLR-202ENST00000455727 VKORC1Q9BQB6 163 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 SHISA9B4DS77 424 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 FCN3O75636 299 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 IGKV1-16P04430 117 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 STAG3L2P0CL84 134 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 STAG3L3P0CL85 134 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 RAB31Q13636 194 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 NCMAPQ5T1S8 102 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 ZNF596Q8TC21 504 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 NEUROG1Q92886 237 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 KAAG1Q9UBP8 84 aa12.31□□□□□ -0.44
LDLR-202ENST00000455727 SRRM4A7MD48 611 aaKnown RBP12.3□□□□□ -0.44
LDLR-202ENST00000455727 NDUFB3O43676 98 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 CXorf1O96002 111 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 RPL29P47914 159 aaKnown RBP12.3□□□□□ -0.44
LDLR-202ENST00000455727 PRR30Q53SZ7 412 aaPredicted RBP12.3□□□□□ -0.44
LDLR-202ENST00000455727 MIC13Q5XKP0 118 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 FAM71F2Q6NXP2 309 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 OR5AN1Q8NGI8 311 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 OR5B3Q8NH48 314 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 PLEKHA3Q9HB20 300 aa12.3□□□□□ -0.44
LDLR-202ENST00000455727 PATZ1Q9HBE1 687 aaKnown RBP12.3□□□□□ -0.44
LDLR-202ENST00000455727 PTPRZ1P23471 2315 aaPredicted RBP12.3□□□□□ -0.44
LDLR-202ENST00000455727 HOXA5P20719 270 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 LRRC10Q5BKY1 277 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 LINC00311Q8N616 119 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 CCL17Q92583 94 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 DMXL2Q8TDJ6 3036 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 TEX50A0A1B0GTY4 177 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 E7EQL1 145 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 F6UZH7 168 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 APOA2P02652 100 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 CCL3L1P16619 93 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 DMRTC2Q8IXT2 367 aaPredicted RBP12.29□□□□□ -0.44
LDLR-202ENST00000455727 ANAPC16Q96DE5 110 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 SSX3Q99909 188 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 PYGO2Q9BRQ0 406 aa12.29□□□□□ -0.44
LDLR-202ENST00000455727 ZNRD1Q9P1U0 126 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms