RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CGB1A6NKQ9 187 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 HMSDA8MTL9 139 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 H0YIZ8 118 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 UPK2O00526 184 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 ARPC5O15511 151 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 KCNAB3O43448 404 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 NDUFA3O95167 84 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 MPC2O95563 127 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 HRASP01112 189 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 MBPP02686 304 aaPredicted RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 OPN1MWP04001 364 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 AMY1AP04745 511 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 PET100P0DJ07 73 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 OPN1MW2P0DN77 364 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 OPN1MW3P0DN78 364 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 PSMB6P28072 239 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 BRS3P32247 399 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 DYNLT3P51808 116 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 BPIFB3P59826 476 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 MMDQ15546 238 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 C10orf55Q5SWW7 151 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 LAMTOR1Q6IAA8 161 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 Q6YL49 198 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 THNSL2Q86YJ6 484 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 Q8N9W7 124 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 NPBQ8NG41 125 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 RNASE11Q8TAA1 199 aaKnown RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 RRNAD1Q96FB5 475 aaKnown RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 SPIN2AQ99865 258 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 SPIN2BQ9BPZ2 258 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 MAGT1Q9H0U3 335 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 PRDM13Q9H4Q3 707 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 ZNF430Q9H8G1 570 aaPredicted RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 METTL1Q9UBP6 276 aaKnown RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 LINC01548A6NM66 108 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 RRHO14718 337 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 NBR2O15453 112 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 HOXA3O43365 443 aaPredicted RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 CHST1O43916 411 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 SNAPC5O75971 98 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 KBTBD11O94819 623 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 SRP14P37108 136 aaKnown RBP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 LGALS7P47929 136 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 S100A10P60903 97 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 UBE2KP61086 200 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 RAB32Q13637 225 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 SMCO1Q147U7 214 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 Q6ZS46 218 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 TMEM167AQ8TBQ9 72 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 TAF15Q92804 592 aaKnown RBP eCLIP8.73□□□□□ -1.01
SCN9A-205ENST00000454569 TMEM160Q9NX00 188 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 BET1LQ9NYM9 111 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 MBD2Q9UBB5 411 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 TCF19Q9Y242 345 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 SIGLEC9Q9Y336 463 aa8.73□□□□□ -1.01
SCN9A-205ENST00000454569 NIPBLQ6KC79 2804 aaeCLIP8.72□□□□□ -1.01
SCN9A-205ENST00000454569 A0A1B0GU03 582 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 NCBP2LA6PVI3 153 aaKnown RBP8.72□□□□□ -1.01
SCN9A-205ENST00000454569 L7N2F9 121 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 ST8SIA3O43173 380 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 SCGB1D2O95969 90 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 FAM106CPP0CH98 169 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 SLC25A4P12235 298 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 ERVK-16P61578 105 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 ID3Q02535 119 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 LGALSLQ3ZCW2 172 aaPredicted RBP8.72□□□□□ -1.01
SCN9A-205ENST00000454569 THOC7Q6I9Y2 204 aaKnown RBP8.72□□□□□ -1.01
SCN9A-205ENST00000454569 ZNF546Q86UE3 836 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 FOXRED2Q8IWF2 684 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 FAM71E2Q8N5Q1 922 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 TEX45Q8NA69 505 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 RBM14Q96PK6 669 aaKnown RBP8.72□□□□□ -1.01
SCN9A-205ENST00000454569 RNF5Q99942 180 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 RNF126Q9BV68 326 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 ESM1Q9NQ30 184 aa8.72□□□□□ -1.01
SCN9A-205ENST00000454569 TEX50A0A1B0GTY4 177 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 C15orf61A6NNL5 157 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 TSC22D2O75157 780 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 ATP6V1G1O75348 118 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 OR2F2O95006 317 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 TMEM50AO95807 157 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 C4BPBP20851 252 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 POLR2GP62487 172 aaKnown RBP eCLIP8.71□□□□□ -1.02
SCN9A-205ENST00000454569 PRSS8Q16651 343 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 C5orf64Q2M2E5 130 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 PPP1R27Q86WC6 154 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 OR1S1Q8NH92 325 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 DCUN1D4Q92564 292 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 TSNAXQ99598 290 aaKnown RBP8.71□□□□□ -1.02
SCN9A-205ENST00000454569 HSPB9Q9BQS6 159 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 SLC25A33Q9BSK2 321 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 C11orf1Q9H5F2 150 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 TMEM14BQ9NUH8 114 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 OR5AC2Q9NZP5 309 aa8.71□□□□□ -1.02
SCN9A-205ENST00000454569 RCL1Q9Y2P8 373 aaKnown RBP8.71□□□□□ -1.02
SCN9A-205ENST00000454569 LSM5Q9Y4Y9 91 aaKnown RBP8.71□□□□□ -1.02
SCN9A-205ENST00000454569 K7EPK0 472 aa8.7□□□□□ -1.02
SCN9A-205ENST00000454569 ATG12O94817 140 aa8.7□□□□□ -1.02
SCN9A-205ENST00000454569 CA2P00918 260 aa8.7□□□□□ -1.02
SCN9A-205ENST00000454569 SLC25A6P12236 298 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms