RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PTPRBP23467 1997 aa1.01□□□□□ -2.25
USP40-209ENST00000452724 IGKV2-40A0A087WW87 121 aaPredicted RBP1□□□□□ -2.25
USP40-209ENST00000452724 TRAV38-1A0A0B4J264 116 aa1□□□□□ -2.25
USP40-209ENST00000452724 A0A0D9SEW6 157 aa1□□□□□ -2.25
USP40-209ENST00000452724 A0A1B0GV50 99 aa1□□□□□ -2.25
USP40-209ENST00000452724 TMEM269A0A1B0GVZ9 245 aa1□□□□□ -2.25
USP40-209ENST00000452724 OR4C45A6NMZ5 311 aa1□□□□□ -2.25
USP40-209ENST00000452724 IGKV2D-40P01614 121 aaPredicted RBP1□□□□□ -2.25
USP40-209ENST00000452724 CRPP02741 224 aa1□□□□□ -2.25
USP40-209ENST00000452724 UCHL3P15374 230 aa1□□□□□ -2.25
USP40-209ENST00000452724 MARCKSL1P49006 195 aa1□□□□□ -2.25
USP40-209ENST00000452724 AQP4P55087 323 aa1□□□□□ -2.25
USP40-209ENST00000452724 RAB5BP61020 215 aa1□□□□□ -2.25
USP40-209ENST00000452724 RAB14P61106 215 aa1□□□□□ -2.25
USP40-209ENST00000452724 CAV1Q03135 178 aa1□□□□□ -2.25
USP40-209ENST00000452724 FABP9Q0Z7S8 132 aa1□□□□□ -2.25
USP40-209ENST00000452724 CDKL4Q5MAI5 379 aa1□□□□□ -2.25
USP40-209ENST00000452724 C1orf195Q5TG92 126 aa1□□□□□ -2.25
USP40-209ENST00000452724 FP248Q71RG6 208 aaPredicted RBP1□□□□□ -2.25
USP40-209ENST00000452724 GPR32P1Q8NGA4 272 aa1□□□□□ -2.25
USP40-209ENST00000452724 PTH2Q96A98 100 aa1□□□□□ -2.25
USP40-209ENST00000452724 ROPN1LQ96C74 230 aa1□□□□□ -2.25
USP40-209ENST00000452724 PARVGQ9HBI0 331 aa1□□□□□ -2.25
USP40-209ENST00000452724 PRELID1Q9Y255 219 aa1□□□□□ -2.25
USP40-209ENST00000452724 MALRD1Q5VYJ5 2156 aa1□□□□□ -2.25
USP40-209ENST00000452724 NIPSNAP2O75323 286 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 AHSA1O95433 338 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 REG1AP05451 166 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 TFPTP0C1Z6 253 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 OR5G3P0C626 314 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 FAM228BP0C875 321 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 CCL1P22362 96 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 RPS12P25398 132 aaKnown RBP0.99□□□□□ -2.25
USP40-209ENST00000452724 G6PCP35575 357 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 AP2S1P53680 142 aaPredicted RBP0.99□□□□□ -2.25
USP40-209ENST00000452724 NAA20P61599 178 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 HIST1H4AP62805 103 aaKnown RBP0.99□□□□□ -2.25
USP40-209ENST00000452724 UBE2IP63279 158 aaKnown RBP0.99□□□□□ -2.25
USP40-209ENST00000452724 RSU1Q15404 277 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 MOGQ16653 247 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 HIST3H3Q16695 136 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 TNFAIP8L3Q5GJ75 292 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 C7orf65Q6ZTY9 151 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 GID4Q8IVV7 300 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 DYNAPQ8N1N2 210 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 UMODL1-AS1Q8N2C9 162 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 DIRAS2Q96HU8 199 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 MRPS26Q9BYN8 205 aaKnown RBP0.99□□□□□ -2.25
USP40-209ENST00000452724 NAT8Q9UHE5 227 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 ANAPC10Q9UM13 185 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 PXMP4Q9Y6I8 212 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 SIPA1L1O43166 1804 aa0.99□□□□□ -2.25
USP40-209ENST00000452724 SMIM23A6NLE4 172 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 TGOLN2O43493 480 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 MRPS14O60783 128 aaKnown RBP0.98□□□□□ -2.25
USP40-209ENST00000452724 PPBPP02775 128 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 CCL5P13501 91 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 RPL30P62888 115 aaKnown RBP0.98□□□□□ -2.25
USP40-209ENST00000452724 Q1T7F1 81 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 ACSM3Q53FZ2 586 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 CCDC122Q5T0U0 273 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 C9orf64Q5T6V5 341 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 PTRHD1Q6GMV3 140 aaKnown RBP0.98□□□□□ -2.25
USP40-209ENST00000452724 SFXN4Q6P4A7 337 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 RPP25LQ8N5L8 163 aaKnown RBP0.98□□□□□ -2.25
USP40-209ENST00000452724 DEFB125Q8N687 156 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 MBD3L1Q8WWY6 194 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 FAM96AQ9H5X1 160 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 COQ4Q9Y3A0 265 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 LSM5Q9Y4Y9 91 aaKnown RBP0.98□□□□□ -2.25
USP40-209ENST00000452724 BAZ2BQ9UIF8 2168 aaKnown RBP0.98□□□□□ -2.25
USP40-209ENST00000452724 DCCP43146 1447 aa0.98□□□□□ -2.25
USP40-209ENST00000452724 FLT4P35916 1363 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 IGKV3-7A0A075B6H7 116 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 EVPLLA8MZ36 301 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 M0R036 132 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 KCNK1O00180 336 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 LST1O00453 97 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 PLA2G10O15496 165 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 ORC5O43913 435 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 C1QAP02745 245 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 CALB1P05937 261 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 RPSAP08865 295 aaKnown RBP0.97□□□□□ -2.25
USP40-209ENST00000452724 SRP19P09132 144 aaKnown RBP0.97□□□□□ -2.25
USP40-209ENST00000452724 FGF6P10767 208 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 KCNE1P15382 129 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 CCR7P32248 378 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 REG1BP48304 166 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 ARHGAP11BQ3KRB8 267 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 GLT8D1Q68CQ7 371 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 RPS19BP1Q86WX3 136 aaKnown RBP0.97□□□□□ -2.25
USP40-209ENST00000452724 C1orf158Q8N1D5 194 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 TMEM86AQ8N2M4 240 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 TBC1D19Q8N5T2 526 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 ACOT12Q8WYK0 555 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 CHST6Q9GZX3 395 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 CXorf21Q9HAI6 301 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 NAV1Q8NEY1 1877 aa0.97□□□□□ -2.25
USP40-209ENST00000452724 MYH11P35749 1972 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 TRAPPC13A5PLN9 417 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms