RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CCDC71LQ8N9Z2 235 aa8.89□□□□□ -0.99
COL28A1-203ENST00000435823 ZFAND1Q8TCF1 268 aa8.89□□□□□ -0.99
COL28A1-203ENST00000435823 DPF1Q92782 380 aa8.89□□□□□ -0.99
COL28A1-203ENST00000435823 FYTTD1Q96QD9 318 aaKnown RBP8.89□□□□□ -0.99
COL28A1-203ENST00000435823 FAM212BQ9NTI7 297 aaPredicted RBP8.89□□□□□ -0.99
COL28A1-203ENST00000435823 TMEM140Q9NV12 185 aa8.89□□□□□ -0.99
COL28A1-203ENST00000435823 MEGF8Q7Z7M0 2845 aa8.89□□□□□ -0.99
COL28A1-203ENST00000435823 TNCP24821 2201 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 MARCH11A6NNE9 402 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 UPK2O00526 184 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 IGHV3-11P01762 117 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 SERPINE2P07093 398 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 RPA2P15927 270 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 PIGPP57054 158 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 RND3P61587 244 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 FHL3Q13643 280 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 BEAN1Q3B7T3 259 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 PYDC2Q56P42 97 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 KPRPQ5T749 579 aaPredicted RBP8.88□□□□□ -0.99
COL28A1-203ENST00000435823 FAAP20Q6NZ36 180 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 TTC9CQ8N5M4 171 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 ADAD2Q8NCV1 583 aaKnown RBP8.88□□□□□ -0.99
COL28A1-203ENST00000435823 OR4C16Q8NGL9 310 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 PRRT1Q99946 306 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 SOSTQ9BQB4 213 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 THAP7Q9BT49 309 aaPredicted RBP8.88□□□□□ -0.99
COL28A1-203ENST00000435823 COMMD5Q9GZQ3 224 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 COPZ2Q9P299 210 aa8.88□□□□□ -0.99
COL28A1-203ENST00000435823 NOTCH1P46531 2555 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 ANKRD20A5PA0PJZ0 165 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 HMX3A6NHT5 357 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 LINC01619G3V211 115 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 SNAPC5O75971 98 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 DHFRP00374 187 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 KRASP01116 189 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 CTSDP07339 412 aaPredicted RBP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 IL6RP08887 468 aaPredicted RBP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 FGF2P09038 288 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 ZNF735P0CB33 412 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 PI3P19957 117 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 PTBP1P26599 531 aaKnown RBP eCLIP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 FAUP35544 74 aaKnown RBP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 G6PCP35575 357 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 SURF2Q15527 256 aaPredicted RBP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 ZNF585BQ52M93 769 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 SPANXN2Q5MJ10 180 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 OR13C8Q8NGS7 320 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 MARCH1Q8TCQ1 289 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 USMG5Q96IX5 58 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 TSC22D3Q99576 134 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 ALX4Q9H161 411 aaPredicted RBP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 SCP2D1Q9UJQ7 156 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 C14orf166Q9Y224 244 aaKnown RBP8.87□□□□□ -0.99
COL28A1-203ENST00000435823 ZNF257Q9Y2Q1 563 aa8.87□□□□□ -0.99
COL28A1-203ENST00000435823 TRAV3A0A0B4J244 114 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 FAM223BA6NKX1 122 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 NPIPB5A8MRT5 1133 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.86□□□□□ -0.99
COL28A1-203ENST00000435823 TEX22C9J3V5 150 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 H0Y980 276 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 ATG12O94817 140 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 HSPB1P04792 205 aaKnown RBP8.86□□□□□ -0.99
COL28A1-203ENST00000435823 AP3S2P59780 193 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 OR2B8PP59922 312 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 THOC7Q6I9Y2 204 aaKnown RBP8.86□□□□□ -0.99
COL28A1-203ENST00000435823 CCDC190Q86UF4 302 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 FAM223AQ8IWN6 122 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 CADM3Q8N126 398 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 Q8N402 240 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 TOMM5Q8N4H5 51 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 QTRT1Q9BXR0 403 aaKnown RBP8.86□□□□□ -0.99
COL28A1-203ENST00000435823 MCUBQ9NWR8 336 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 V9GYH0 126 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 NOTCH3Q9UM47 2321 aa8.86□□□□□ -0.99
COL28A1-203ENST00000435823 IGHV4OR15-8A0A075B7B6 117 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 A0A087WW49 117 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 C3orf85A0A1B0GTC6 90 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 B3GALNT1O75752 331 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 PRH1P02810 166 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 DEFA4P12838 97 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 MYOD1P15172 320 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 ZP3P21754 424 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 PSMB6P28072 239 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 RHOGP84095 191 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 DEFA5Q01523 94 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 FOXB2Q5VYV0 432 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 H2BFWTQ7Z2G1 175 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 REC114Q7Z4M0 266 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 HSD17B13Q7Z5P4 300 aaPredicted RBP8.85□□□□□ -0.99
COL28A1-203ENST00000435823 NECAP1Q8NC96 275 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 OR51S1Q8NGJ8 323 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 OR6Q1Q8NGQ2 317 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 OR1L8Q8NGR8 309 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 SCGB3A2Q96PL1 93 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 SRSF8Q9BRL6 282 aaKnown RBP8.85□□□□□ -0.99
COL28A1-203ENST00000435823 KRTAP9-2Q9BYQ4 174 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 RANGRFQ9HD47 186 aaPredicted RBP8.85□□□□□ -0.99
COL28A1-203ENST00000435823 SLC2A8Q9NY64 477 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 FKBP11Q9NYL4 201 aa8.85□□□□□ -0.99
COL28A1-203ENST00000435823 ZMAT5Q9UDW3 170 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms