RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 RND3P61587 244 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 CCDC71LQ8N9Z2 235 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 WFDC9Q8NEX5 89 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 OR1N2Q8NGR9 330 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 PRRT1Q99946 306 aa14.48□□□□□ -0.09
SHH-203ENST00000435425 C14orf166Q9Y224 244 aaKnown RBP14.48□□□□□ -0.09
SHH-203ENST00000435425 C13orf42A0A1B0GVH6 325 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 H3BUA1 57 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 I3L521 148 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 SERPINE2P07093 398 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 CTSDP07339 412 aaPredicted RBP14.47□□□□□ -0.09
SHH-203ENST00000435425 PTBP1P26599 531 aaKnown RBP eCLIP14.47□□□□□ -0.09
SHH-203ENST00000435425 DEFA6Q01524 100 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 TOMM5Q8N4H5 51 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 ADAD2Q8NCV1 583 aaKnown RBP14.47□□□□□ -0.09
SHH-203ENST00000435425 DPF1Q92782 380 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 TP53RKQ96S44 253 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 COMMD5Q9GZQ3 224 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 NSG2Q9Y328 171 aa14.47□□□□□ -0.09
SHH-203ENST00000435425 C3orf85A0A1B0GTC6 90 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 A0A1B0GW64 132 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 TEX22C9J3V5 150 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 ECI1P42126 302 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 SP6Q3SY56 376 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 SAMD5Q5TGI4 173 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 TRIM63Q969Q1 353 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 SCP2D1Q9UJQ7 156 aa14.46□□□□□ -0.09
SHH-203ENST00000435425 SNAPC5O75971 98 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 IGKV1-39P01597 117 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 IGKV1D-39P04432 117 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 REG1AP05451 166 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 LGALS1P09382 135 aaKnown RBP14.45□□□□□ -0.1
SHH-203ENST00000435425 AREGP15514 252 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 FAUP35544 74 aaKnown RBP14.45□□□□□ -0.1
SHH-203ENST00000435425 ETV6P41212 452 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 AP3S2P59780 193 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 ZNF616Q08AN1 781 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 KLF9Q13886 244 aaPredicted RBP14.45□□□□□ -0.1
SHH-203ENST00000435425 ZNF57Q68EA5 555 aaPredicted RBP14.45□□□□□ -0.1
SHH-203ENST00000435425 C19orf35Q6ZS72 473 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 TTC9CQ8N5M4 171 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 RTBDNQ9BSG5 229 aaPredicted RBP14.45□□□□□ -0.1
SHH-203ENST00000435425 HINT2Q9BX68 163 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 SRRQ9GZT4 340 aa14.45□□□□□ -0.1
SHH-203ENST00000435425 FAM212BQ9NTI7 297 aaPredicted RBP14.45□□□□□ -0.1
SHH-203ENST00000435425 IGHV4OR15-8A0A075B7B6 117 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 A0A087WW49 117 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 A0A0G2JLM5 398 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 TEX13DA0A0J9YY54 714 aaPredicted RBP14.44□□□□□ -0.1
SHH-203ENST00000435425 ANKRD34BA5PLL1 514 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 CGB1A6NKQ9 187 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 H0Y980 276 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 INPP1P49441 399 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 OR2B8PP59922 312 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 RUNX1Q01196 453 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 SURF2Q15527 256 aaPredicted RBP14.44□□□□□ -0.1
SHH-203ENST00000435425 TRIM16LQ309B1 348 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 H2BFWTQ7Z2G1 175 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 SLC25A42Q86VD7 318 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 RCC1LQ96I51 464 aaKnown RBP14.44□□□□□ -0.1
SHH-203ENST00000435425 SEC22AQ96IW7 307 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 C5orf66Q9H5L9 145 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 GPR132Q9UNW8 380 aa14.44□□□□□ -0.1
SHH-203ENST00000435425 TEX50A0A1B0GTY4 177 aa14.43□□□□□ -0.1
SHH-203ENST00000435425 RBMXL2O75526 392 aaKnown RBP14.43□□□□□ -0.1
SHH-203ENST00000435425 RHOGP84095 191 aa14.43□□□□□ -0.1
SHH-203ENST00000435425 ZNF45Q02386 682 aa14.43□□□□□ -0.1
SHH-203ENST00000435425 SLC2A8Q9NY64 477 aa14.43□□□□□ -0.1
SHH-203ENST00000435425 ZNF257Q9Y2Q1 563 aa14.43□□□□□ -0.1
SHH-203ENST00000435425 OR51B2Q9Y5P1 312 aa14.43□□□□□ -0.1
SHH-203ENST00000435425 LINC01619G3V211 115 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 OR2J3O76001 311 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 OR5AC1P0C628 307 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 OR8U8P0C7N1 319 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 TRAPPC2P0DI81 140 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 TRAPPC2BP0DI82 140 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 PSMB6P28072 239 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 SLURP1P55000 103 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 FHL3Q13643 280 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 BAK1Q16611 211 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 IZUMO4Q1ZYL8 232 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 BEAN1Q3B7T3 259 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 TRIQKQ629K1 86 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 OR10W1Q8NGF6 305 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 OR1L8Q8NGR8 309 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 QTRT1Q9BXR0 403 aaKnown RBP14.42□□□□□ -0.1
SHH-203ENST00000435425 AKIP1Q9NQ31 210 aa14.42□□□□□ -0.1
SHH-203ENST00000435425 LINC00854A0A1B0GVQ3 168 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 NPIPB5A8MRT5 1133 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 BRI3O95415 125 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 PRB2P02812 416 aaPredicted RBP14.41□□□□□ -0.1
SHH-203ENST00000435425 HSPB1P04792 205 aaKnown RBP14.41□□□□□ -0.1
SHH-203ENST00000435425 DEFA4P12838 97 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 AKR1C2P52895 323 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 ATP5G2Q06055 141 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 GDPD1Q8N9F7 314 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 OR4A16Q8NH70 328 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 USMG5Q96IX5 58 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 SCGB3A2Q96PL1 93 aa14.41□□□□□ -0.1
SHH-203ENST00000435425 TSC22D3Q99576 134 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms