RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 MS4A5Q9H3V2 200 aa9.35□□□□□ -0.91
USP4-205ENST00000431357 ZNF71Q9NQZ8 489 aaPredicted RBP9.35□□□□□ -0.91
USP4-205ENST00000431357 TMEM140Q9NV12 185 aa9.35□□□□□ -0.91
USP4-205ENST00000431357 A0A0U1RQK1 487 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 ZNF320A2RRD8 509 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 RRHO14718 337 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 MT-CO2P00403 227 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 IL3RAP26951 378 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 LOXL3P58215 753 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 RPL15P61313 204 aaKnown RBP9.34□□□□□ -0.91
USP4-205ENST00000431357 RAB31Q13636 194 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 DEFB123Q8N688 67 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 GCSAMQ8N6F7 178 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 Q8TCH9 128 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 PATZ1Q9HBE1 687 aaKnown RBP9.34□□□□□ -0.91
USP4-205ENST00000431357 DUSP13Q9UII6 198 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 TCF19Q9Y242 345 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 TRAPPC1Q9Y5R8 145 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 TRAV9-1A0A075B6T8 112 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 FNDC10F2Z333 226 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 ARL14EPLP0DKL9 152 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 DEFA4P12838 97 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 THBS3P49746 956 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 TRIP6Q15654 476 aaKnown RBP9.34□□□□□ -0.91
USP4-205ENST00000431357 LEMD1Q68G75 181 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 NUDT10Q8NFP7 164 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 FDCSPQ8NFU4 85 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 DDB2Q92466 427 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 SFRP2Q96HF1 295 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 ADTRPQ96IZ2 230 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 CALYQ9NYX4 217 aa9.34□□□□□ -0.91
USP4-205ENST00000431357 LSM4Q9Y4Z0 139 aaKnown RBP9.34□□□□□ -0.91
USP4-205ENST00000431357 USF3Q68DE3 2245 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 C15orf61A6NNL5 157 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 HSPE1P61604 102 aaKnown RBP9.33□□□□□ -0.92
USP4-205ENST00000431357 RHOBP62745 196 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 RPL39P5Q59GN2 51 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 MIC13Q5XKP0 118 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 TEPPQ6URK8 271 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 ENY2Q9NPA8 101 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 FOXA2Q9Y261 457 aaPredicted RBP9.33□□□□□ -0.92
USP4-205ENST00000431357 SLC25A15Q9Y619 301 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 PTPRBP23467 1997 aa9.33□□□□□ -0.92
USP4-205ENST00000431357 NKX2-8O15522 239 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 TNFSF13O75888 250 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 CGAP01215 116 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 IGHV3-13P01766 116 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 CGB3P0DN86 165 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 CGB7P0DN87 165 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 RPL29P47914 159 aaKnown RBP9.32□□□□□ -0.92
USP4-205ENST00000431357 ZNF134P52741 427 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 KLF3P57682 345 aaPredicted RBP9.32□□□□□ -0.92
USP4-205ENST00000431357 ABHD12Q8N2K0 398 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 GBGT1Q8N5D6 347 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 STARD4Q96DR4 205 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 SDSLQ96GA7 329 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 SFXN3Q9BWM7 321 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 ELOVL5Q9NYP7 299 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 ZFP30Q9Y2G7 519 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 LY96Q9Y6Y9 160 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 ARL2-SNX15V9GYD0 113 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 GTF3C1Q12789 2109 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 YLPM1P49750 1951 aaKnown RBP9.32□□□□□ -0.92
USP4-205ENST00000431357 LHBP01229 141 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 IL6RP08887 468 aaPredicted RBP9.32□□□□□ -0.92
USP4-205ENST00000431357 C1QTNF9P0C862 333 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 NPY1RP25929 384 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 GCHFRP30047 84 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 APOBEC3AP31941 199 aaPredicted RBP9.32□□□□□ -0.92
USP4-205ENST00000431357 YPEL3P61236 119 aaPredicted RBP9.32□□□□□ -0.92
USP4-205ENST00000431357 IQCJQ1A5X6 159 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 C3orf36Q3SXR2 165 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 ETFRF1Q6IPR1 90 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 OR10G8Q8NGN5 311 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 SGMS2Q8NHU3 365 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 TNFRSF14Q92956 283 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 UHRF2Q96PU4 802 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 DERL1Q9BUN8 251 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 FAM234AQ9H0X4 552 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 ZDBF2Q9HCK1 2354 aa9.32□□□□□ -0.92
USP4-205ENST00000431357 TRAV3A0A0B4J244 114 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 SIAH2O43255 324 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 POU2AF1Q16633 256 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 TMEM30BQ3MIR4 351 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 MRPL41Q8IXM3 137 aaKnown RBP9.31□□□□□ -0.92
USP4-205ENST00000431357 VKORC1L1Q8N0U8 176 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 C11orf52Q96A22 123 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 PLPPR2Q96GM1 343 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 OR2V2Q96R30 315 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 TMEM14BQ9NUH8 114 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 FAM186AA6NE01 2351 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 IGHV3OR15-7A0A075B7D8 119 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 KBTBD11-OT1A0A1B0GTJ5 212 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 ZNF705GA8MUZ8 300 aaPredicted RBP9.31□□□□□ -0.92
USP4-205ENST00000431357 C9JCJ5 164 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 AREGP15514 252 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 TIMP3P35625 211 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 GLRXP35754 106 aa9.31□□□□□ -0.92
USP4-205ENST00000431357 ATP5IP56385 69 aaPredicted RBP9.31□□□□□ -0.92
USP4-205ENST00000431357 EFNB3Q15768 340 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms