RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CHST1O43916 411 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 LY86O95711 162 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 IAPPP10997 89 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 CNTFRP26992 372 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 SRP14P37108 136 aaKnown RBP13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 CAV2P51636 162 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 DYNLT3P51808 116 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 TMEM65Q6PI78 240 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 SPNS3Q6ZMD2 512 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 OR8H1Q8NGG4 311 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 DTD1Q8TEA8 209 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 RITA1Q96K30 269 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 ZNF430Q9H8G1 570 aaPredicted RBP13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 TMEM14BQ9NUH8 114 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 HSPB11Q9Y547 144 aa13.73□□□□□ -0.21
CCDC28B-202ENST00000421922 H0YIZ8 118 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 LYL1P12980 280 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 MAS1LP35410 378 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 P2RY1P47900 373 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 AP2S1P53680 142 aaPredicted RBP13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 HSPE1P61604 102 aaKnown RBP13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 GNB1P62873 340 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 EBI3Q14213 229 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 SPINK9Q5DT21 86 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 FAM120AOSQ5T036 256 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 MRPL41Q8IXM3 137 aaKnown RBP13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 OR5B3Q8NH48 314 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 ZDHHC16Q969W1 377 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 SSX3Q99909 188 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 RNF126Q9BV68 326 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 HIPK2Q9H2X6 1198 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 FBXL15Q9H469 300 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 TNFSF18Q9UNG2 199 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 TCF19Q9Y242 345 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 ZNF257Q9Y2Q1 563 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 SIGLEC9Q9Y336 463 aa13.72□□□□□ -0.21
CCDC28B-202ENST00000421922 CSPG4Q6UVK1 2322 aa13.71□□□□□ -0.21
CCDC28B-202ENST00000421922 NAV3Q8IVL0 2385 aa13.71□□□□□ -0.21
CCDC28B-202ENST00000421922 BTBD17A6NE02 478 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 FSHBP01225 129 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 F2RL1P55085 397 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 TNXAQ16473 311 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 PRSS8Q16651 343 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 AARDQ4LEZ3 155 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 ACOT7LQ6ZUV0 252 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 PPP1R27Q86WC6 154 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 NPBQ8NG41 125 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 OR1L8Q8NGR8 309 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 SLC25A31Q9H0C2 315 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 PLEKHA3Q9HB20 300 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 HEYLQ9NQ87 328 aaPredicted RBP13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 PSENENQ9NZ42 101 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 PITPNC1Q9UKF7 332 aa13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 TET2Q6N021 2002 aaPredicted RBP13.71□□□□□ -0.22
CCDC28B-202ENST00000421922 A0A0D9SG52 128 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 OR2F2O95006 317 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 NDUFA3O95167 84 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 CNIH1O95406 144 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 IL6RP08887 468 aaPredicted RBP13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 RPP30P78346 268 aaKnown RBP13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 OR2F1Q13607 317 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 AANATQ16613 207 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 STX12Q86Y82 276 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 C9orf62Q8N4C0 152 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 OR2C3Q8N628 320 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 C22orf15Q8WYQ4 148 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 TPSG1Q9NRR2 321 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 PAIP2BQ9ULR5 123 aaKnown RBP13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 WSB1Q9Y6I7 421 aa13.7□□□□□ -0.22
CCDC28B-202ENST00000421922 A0A1W2PN81 502 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 H3BUX3 64 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 OPN1MWP04001 364 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 OPN1MW2P0DN77 364 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 OPN1MW3P0DN78 364 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 RPL12P30050 165 aaKnown RBP13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 CHRNA7P36544 502 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 RPL27AP46776 148 aaKnown RBP13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 TAS2R30P59541 319 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 PRCDQ00LT1 54 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 ZNF345Q14585 488 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 C5orf64Q2M2E5 130 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 Q8N6K4 173 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 SMIM8Q96KF7 97 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 RASL11BQ9BPW5 248 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 ARL6Q9H0F7 186 aa13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 LYRM2Q9NU23 88 aaPredicted RBP13.69□□□□□ -0.22
CCDC28B-202ENST00000421922 TEX50A0A1B0GTY4 177 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 KANTRA0A1W2PQU2 76 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 H3BP45 60 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 TSC22D2O75157 780 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 CRYGBP07316 175 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 SCGB2A2Q13296 93 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 DEFB112Q30KQ8 113 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 SPANXN5Q5MJ07 72 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 C9orf139Q6ZV77 190 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 AQP10Q96PS8 301 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 SLC25A33Q9BSK2 321 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 MOB4Q9Y3A3 225 aa13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 STRAPQ9Y3F4 350 aaKnown RBP13.68□□□□□ -0.22
CCDC28B-202ENST00000421922 SOX21Q9Y651 276 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms