RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 LIMS3P0CW19 117 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 LIMS4P0CW20 117 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 NFYBP25208 207 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 TEAD1P28347 426 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 CD34P28906 385 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR10J1P30954 320 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 SULT1A1P50225 295 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 SULT1A2P50226 295 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 CLDN12P56749 244 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 MLF1P58340 268 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 LSM6P62312 80 aaKnown RBP2.79□□□□□ -1.96
VPS54-204ENST00000416400 TSPAN31Q12999 210 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 EIF4EBP1Q13541 118 aaPredicted RBP2.79□□□□□ -1.96
VPS54-204ENST00000416400 TAL2Q16559 108 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 SLC25A35Q3KQZ1 300 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ACSM3Q53FZ2 586 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ACTBL2Q562R1 376 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 TMEM69Q5SWH9 247 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 MFSD14CQ5VZR4 134 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR2T2Q6IF00 324 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 NOXRED1Q6NXP6 359 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DEGS2Q6QHC5 323 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 IGFL3Q6UXB1 125 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 HEPN1Q6WQI6 88 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 RPS27LQ71UM5 84 aaKnown RBP2.79□□□□□ -1.96
VPS54-204ENST00000416400 HIST3H2BBQ8N257 126 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 SYS1Q8N2H4 156 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 LRRC18Q8N456 261 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DRAM1Q8N682 238 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 TMEM229BQ8NBD8 167 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 PLPP5Q8NEB5 264 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR4K17Q8NGC6 315 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR6N2Q8NGY6 317 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR5AK2Q8NH90 309 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR1L1Q8NH94 360 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 C16orf78Q8WTQ4 265 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ORAOV1Q8WV07 137 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 PPCDCQ96CD2 204 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 PACRGQ96M98 296 aaPredicted RBP2.79□□□□□ -1.96
VPS54-204ENST00000416400 RNF5Q99942 180 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 PRRT1Q99946 306 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DDA1Q9BW61 102 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 HINT2Q9BX68 163 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ANGPTL4Q9BY76 406 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 NMES1Q9C002 83 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR8D2Q9GZM6 311 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 CHRNA10Q9GZZ6 450 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 NECAP2Q9NVZ3 263 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DDIT4Q9NX09 232 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 OR5AC2Q9NZP5 309 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DNAJC27Q9NZQ0 273 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DHCR7Q9UBM7 475 aaKnown RBP2.79□□□□□ -1.96
VPS54-204ENST00000416400 VPS29Q9UBQ0 182 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ZFP30Q9Y2G7 519 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 MYH3P11055 1940 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 LAMB4A4D0S4 1761 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 FMN2Q9NZ56 1722 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 PLCH1Q4KWH8 1693 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 RIMS1Q86UR5 1692 aaKnown RBP2.79□□□□□ -1.96
VPS54-204ENST00000416400 KCPQ6ZWJ8 1503 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 DOCK8Q8NF50 2099 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 MYO10Q9HD67 2058 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 ECM29Q5VYK3 1845 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 TRAV8-7A0A075B6U6 113 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 IGHV3-49A0A0A0MS15 119 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 CENPVL3A0A0U1RRI6 287 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 A0A1B0GTI1 187 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SLC5A10A0PJK1 596 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 LOC730098B7Z3J9 87 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 K7ERU9 68 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 OR1I1O60431 355 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 IFNA21P01568 189 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 CSN2P05814 226 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 OR5AL1P0C617 328 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SEC11BP0C7V7 166 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SCGB1A1P11684 91 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 ATF1P18846 271 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 PRSS3P35030 304 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 CD200P41217 278 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 GALR1P47211 349 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 CAV3P56539 151 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 H2BFSP57053 126 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 HIST1H3AP68431 136 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 RPL19P84098 196 aaKnown RBP2.78□□□□□ -1.96
VPS54-204ENST00000416400 PRDX4Q13162 271 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SKP2Q13309 424 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 TAF9Q16594 264 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 ACOT6Q3I5F7 207 aaPredicted RBP2.78□□□□□ -1.96
VPS54-204ENST00000416400 LINC00303Q3SY05 128 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 NCMAPQ5T1S8 102 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 C1orf194Q5T5A4 169 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 TNFAIP8L2Q6P589 184 aaPredicted RBP2.78□□□□□ -1.96
VPS54-204ENST00000416400 GRINAQ7Z429 371 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 UMODL1-AS1Q8N2C9 162 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 FAM24BQ8N5W8 94 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 KRTCAP2Q8N6L1 136 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 SLC35G3Q8N808 338 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 ZDHHC22Q8N966 263 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 OR8G5Q8NG78 346 aa2.78□□□□□ -1.96
VPS54-204ENST00000416400 ASB17Q8WXJ9 295 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms