RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 GREB1Q4ZG55 1949 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF479Q96JC4 524 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 IL36BQ9NZH7 164 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 ASB1Q9Y576 335 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 SRFP11831 508 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 DUTP33316 252 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 PAQR9Q6ZVX9 377 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 DLX4Q92988 240 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF71Q9NQZ8 489 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 C1QL1O75973 258 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 PRDM13Q9H4Q3 707 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 WNK3Q9BYP7 1800 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 LIPT2A6NK58 231 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 MPTX1A8MV57 137 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 C16orf97H3BN30 126 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 RND3P61587 244 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 FUT5Q11128 374 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 CACNA1EQ15878 2313 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 LTBP3Q9NS15 1303 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 TDHQ8IZJ6 230 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 CIARTQ8N365 385 aaPredicted RBP11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 OR9G4Q8NGQ1 327 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 LINC01587Q99440 93 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 ST20Q9HBF5 79 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 ST6GALNAC2Q9UJ37 374 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 LRP6O75581 1613 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 TMEM229AB2RXF0 380 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 HMGCLL1Q8TB92 370 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 MIXL1Q9H2W2 232 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 SIRT4Q9Y6E7 314 aaPredicted RBP11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 LINC00587B1AMM8 73 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 MS4A4AQ96JQ5 239 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 CHTOPQ9Y3Y2 248 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 WFDC5Q8TCV5 224 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 HIGD1CA8MV81 97 aa11.47□□□□□ -0.57
CCDC88A-204ENST00000413716 PSME4Q14997 1843 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 HYAL3O43820 417 aaPredicted RBP11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 EDIL3O43854 480 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 PRTN3P24158 256 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 CENPVQ7Z7K6 275 aaPredicted RBP11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 KLHDC9Q8NEP7 349 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 C2orf82Q6UX34 121 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 SFXN3Q9BWM7 321 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 RPRMQ9NS64 109 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 UCP3P55916 312 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 LINC00158P58513 81 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 PCSK4Q6UW60 755 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 DTX1Q86Y01 620 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 NMBP08949 121 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 CD28P10747 220 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 FAM19A2Q8N3H0 131 aa11.46□□□□□ -0.57
CCDC88A-204ENST00000413716 LEPROTO15243 131 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 HSD52Q0P140 79 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 GAGE2AQ6NT46 116 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 TMEM174Q8WUU8 243 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 WDYHV1Q96HA8 205 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 PHF7Q9BWX1 381 aaPredicted RBP11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 SPINK2P20155 84 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 TMEM258P61165 79 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 CT83Q5H943 113 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 KLF4O43474 513 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 SPINK8P0C7L1 97 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 ORMDL2Q53FV1 153 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 TLNRD1Q9H1K6 362 aa11.46□□□□□ -0.58
CCDC88A-204ENST00000413716 NPIPB11E5RHQ5 1161 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 IGKCP01834 107 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 GPBAR1Q8TDU6 330 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 GFRA3O60609 400 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 SPEM1Q8N4L4 309 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 FER1L6-AS1Q8NA97 138 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 USP54Q70EL1 1684 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 SPANXDQ9BXN6 97 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 CNOT1A5YKK6 2376 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 ZNF385AQ96PM9 386 aaKnown RBP11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 GCHFRP30047 84 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 A0A1W2PRS3 328 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 IZUMO1RA6ND01 250 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 PDFQ9HBH1 243 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 IL11P20809 199 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 JMJD8Q96S16 334 aa11.45□□□□□ -0.58
CCDC88A-204ENST00000413716 PCNX1Q96RV3 2341 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 TRACP01848 142 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 HTN3P15516 51 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 THSD4Q6ZMP0 1018 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 LOXL4Q96JB6 756 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 GTSF1LQ9H1H1 148 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 KCNE1BA0A087WTH5 132 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 MAGEA5P43359 124 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 ZNF124Q15973 351 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 TRAV41A0A0B4J266 112 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 INS-IGF2F8WCM5 200 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 INSP01308 110 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 OR52E5Q8NH55 327 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 COX6B1P14854 86 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 GPR132Q9UNW8 380 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 IGHV3-72A0A0B4J1Y9 119 aa11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 ZNF660Q6AZW8 331 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 ZNF784Q8NCA9 323 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-204ENST00000413716 R4GN57 208 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms