RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 C16orf92Q96LL3 132 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 LY96Q9Y6Y9 160 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 CACNA1BQ00975 2339 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 TRAV8-1A0A0A6YYK1 113 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 GCSAMLQ5JQS6 135 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 ACTL10Q5JWF8 245 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 KLHDC9Q8NEP7 349 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 FAM181BA6NEQ2 426 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 FGFRL1Q8N441 504 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 KIR3DL3Q8N743 410 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 DENND4AQ7Z401 1863 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 CRYBB3P26998 211 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 HES7Q9BYE0 225 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 SLC25A48Q6ZT89 311 aaKnown RBP11.09□□□□□ -0.63
COL6A3-206ENST00000409809 TMUB1Q9BVT8 246 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 RPRMQ9NS64 109 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 TRAV5A0A0B4J249 113 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 F2RL2O00254 374 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 NANOS3P60323 173 aaKnown RBP11.09□□□□□ -0.63
COL6A3-206ENST00000409809 ZIC1Q15915 447 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 WIPI1Q5MNZ9 446 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-206ENST00000409809 SLC25A10Q9UBX3 287 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-206ENST00000409809 TRAV17A0A0B4J275 112 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 CACNG7P62955 275 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 PHLDA1Q8WV24 401 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-206ENST00000409809 Q96M66 194 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 A8MWP6 167 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 PEX7O00628 323 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 MGST3O14880 152 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 AMBPP02760 352 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 SUMO2P61956 95 aaKnown RBP11.08□□□□□ -0.64
COL6A3-206ENST00000409809 MIC13Q5XKP0 118 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 CCL26Q9Y258 94 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 UCP2P55851 309 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 OR52M1Q8NGK5 317 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 CLEC1BQ9P126 229 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 PGLYRP1O75594 196 aaPredicted RBP11.08□□□□□ -0.64
COL6A3-206ENST00000409809 DNAJC30Q96LL9 226 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 SCN10AQ9Y5Y9 1956 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 ADAMTS7Q9UKP4 1686 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 TRGV5A0A0B4J1U4 118 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 SRSF1Q07955 248 aaKnown RBP eCLIP11.08□□□□□ -0.64
COL6A3-206ENST00000409809 PRR13Q9NZ81 148 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 SYNGR3O43761 229 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 IGHMP01871 453 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 RRN3P1Q2M238 152 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 APOBEC4Q8WW27 367 aaKnown RBP11.08□□□□□ -0.64
COL6A3-206ENST00000409809 PIMREGQ9BSJ6 248 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 SLC25A15Q9Y619 301 aa11.08□□□□□ -0.64
COL6A3-206ENST00000409809 CEACAM5P06731 702 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 P2RY6Q15077 328 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 RNF7Q9UBF6 113 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 HCFC2Q9Y5Z7 792 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 SPRY3O43610 288 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 BGLAPP02818 100 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 ZDHHC16Q969W1 377 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 PGPA6NDG6 321 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 FOXC2Q99958 501 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 IGHV3-15A0A0B4J1V0 119 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 TRAV2A0A0B4J234 112 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 TRBV7-9A0A0J9YWB2 115 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 WFDC8Q8IUA0 241 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 ZNF488Q96MN9 340 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 F2Z2F3 143 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 RPL27AP46776 148 aaKnown RBP11.07□□□□□ -0.64
COL6A3-206ENST00000409809 ICAM4Q14773 271 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 FREM1Q5H8C1 2179 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 TMPRSS2O15393 492 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 TNFSF14O43557 240 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 TDGF1P3P51864 188 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 LPAL2Q16609 132 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 OR4D11Q8NGI4 311 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 FSCN3Q9NQT6 498 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 A0A1B0GWJ7 208 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 C9JCJ5 164 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 TDHQ8IZJ6 230 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 GDF15Q99988 308 aa11.07□□□□□ -0.64
COL6A3-206ENST00000409809 RNASE1P07998 156 aaKnown RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 C1orf185Q5T7R7 199 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 C12orf76Q8N812 135 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 FOXD3Q9UJU5 478 aaPredicted RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 KLHDC2Q9Y2U9 406 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 SF3B6Q9Y3B4 125 aaKnown RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 FXYD3Q14802 87 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 RIF1Q5UIP0 2472 aaKnown RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 IGKCP01834 107 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 LHX2P50458 406 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 DYSFO75923 2080 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 FAM157AC9JC47 383 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 DXOO77932 396 aaKnown RBP11.06□□□□□ -0.64
COL6A3-206ENST00000409809 ZP1P60852 638 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 GTSF1LQ9H1H1 148 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 WBP1LQ9NX94 342 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 MLNRO43193 412 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 UCP1P25874 307 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 ZNF415Q09FC8 603 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 NABP2Q9BQ15 211 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 MFAP4P55083 255 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 CST9LQ9H4G1 147 aa11.06□□□□□ -0.64
COL6A3-206ENST00000409809 MMP17Q9ULZ9 603 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms