RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 EIF3GO75821 320 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIG4-202ENST00000405925 CD8AP01732 235 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 SAA1P0DJI8 122 aaPredicted RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 CCKARP32238 428 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 BMI1P35226 326 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 GATA4P43694 442 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 BIVMQ86UB2 503 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 OR5R1Q8NH85 324 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 TAF15Q92804 592 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIG4-202ENST00000405925 YAE1D1Q9NRH1 226 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 TMEM56-RWDD3S4R434 201 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 IGHV2-26A0A0B4J1V2 119 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 C10orf113Q5VZT2 155 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 MIC13Q5XKP0 118 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 DUX4L9Q6RFH8 374 aaPredicted RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 NECAP1Q8NC96 275 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 RNF166Q96A37 237 aaPredicted RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 SMCO4Q9NRQ5 59 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 CFDP00746 253 aaPredicted RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 SOD3P08294 240 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 CFPP27918 469 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 SLC35B1P78383 322 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 TUSC1Q2TAM9 212 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 ZNF660Q6AZW8 331 aaPredicted RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 KDF1Q8NAX2 398 aaPredicted RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 OR1L6Q8NGR2 347 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 SMIM8Q96KF7 97 aa7.52□□□□□ -1.21
LIG4-202ENST00000405925 FAM103A1Q9BTL3 118 aaKnown RBP7.52□□□□□ -1.21
LIG4-202ENST00000405925 USP9YO00507 2555 aaPredicted RBP7.51□□□□□ -1.21
LIG4-202ENST00000405925 HAX1O00165 279 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 NDUFS7O75251 213 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 MOSP00540 346 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 CA2P00918 260 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 SFTA3P0C7M3 94 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 NPIPB3Q92617 1050 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 RNF2Q99496 336 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 MYO9AB2RTY4 2548 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 ATG2AQ2TAZ0 1938 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 HIVEP2P31629 2446 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 CTXND1A0A1B0GTU2 59 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 DNASE2O00115 360 aaPredicted RBP7.51□□□□□ -1.21
LIG4-202ENST00000405925 SLC31A2O15432 143 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 DVL1P1P54792 670 aaPredicted RBP7.51□□□□□ -1.21
LIG4-202ENST00000405925 LOXL3P58215 753 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 DSCR9P59020 149 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 ARL16Q0P5N6 197 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 HERPUD1Q15011 391 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 EFNB3Q15768 340 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 SRSF7Q16629 238 aaKnown RBP eCLIP7.51□□□□□ -1.21
LIG4-202ENST00000405925 GAB2Q9UQC2 676 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 TRBV6-6A0A0A6YYG2 114 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 IGSF23A1L1A6 192 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 SHISA9B4DS77 424 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 HYPMO75409 117 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 ERVK11-1P61568 191 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 RPL30P62888 115 aaKnown RBP7.51□□□□□ -1.21
LIG4-202ENST00000405925 SERF2P84101 59 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 SLC16A13Q7RTY0 426 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 LDLRAD3Q86YD5 345 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 OR4A5Q8NH83 315 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 NKX6-2Q9C056 277 aaPredicted RBP7.51□□□□□ -1.21
LIG4-202ENST00000405925 TMEM167BQ9NRX6 74 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 S4R3C0 116 aa7.51□□□□□ -1.21
LIG4-202ENST00000405925 DOCK11Q5JSL3 2073 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 PCP4L1A6NKN8 68 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 MPDU1O75352 247 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 COL8A1P27658 744 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 LINC00205P59089 165 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 SELENOTP62341 195 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 SUPT4H1P63272 117 aaKnown RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 GAMTQ14353 236 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 TMEM41BQ5BJD5 291 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 LY6G6FQ5SQ64 297 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 TMEM88Q6PEY1 159 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 TRAF4Q9BUZ4 470 aaPredicted RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 ZNF430Q9H8G1 570 aaPredicted RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 GAR1Q9NY12 217 aaKnown RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 EML5Q05BV3 1969 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 RBFOX3A6NFN3 312 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 KIAA1324LA8MWY0 1029 aaPredicted RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 B4DSR2 109 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 RBFOX2O43251 390 aaKnown RBP eCLIP7.5□□□□□ -1.21
LIG4-202ENST00000405925 HLA-DRB5Q30154 266 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 TMEM155Q4W5P6 130 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 SLC35E3Q7Z769 313 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 MAPK1IP1LQ8NDC0 245 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 SLC35B3Q9H1N7 401 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 NBR2O15453 112 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 PAGE4O60829 102 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 OR2C1O95371 312 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 COMPP49747 757 aaPredicted RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 BRD3OSQ6XYD6 125 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 C16orf82Q7Z2V1 217 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 SMIM15Q7Z3B0 74 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 VMO1Q7Z5L0 202 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 HSD17B13Q7Z5P4 300 aaPredicted RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 ZNF429Q86V71 674 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 PRORYQ9H606 182 aa7.5□□□□□ -1.21
LIG4-202ENST00000405925 MBNL3Q9NUK0 354 aaKnown RBP7.5□□□□□ -1.21
LIG4-202ENST00000405925 PKD1L2Q7Z442 2459 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms