RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 OR9G9P0C7N8 305 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 LINC00205P59089 165 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 FAM209BQ5JX69 171 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 OR51G1Q8NGK1 321 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 YPEL2Q96QA6 119 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 GSN-AS1Q9NRJ2 163 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 IGHV3-48P01763 117 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 CD81P60033 236 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 HLA-DRB5Q30154 266 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 ZNF585BQ52M93 769 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 COL6A6A6NMZ7 2263 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 UBE2CO00762 179 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 SLC25A17O43808 307 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 CXCL1P09341 107 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 CRYBB3P26998 211 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 HCP5Q6MZN7 132 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 GATAD1Q8WUU5 269 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 PAXXQ9BUH6 204 aa15.47■□□□□ 0.07
USP48-204ENST00000400301 FAM90A1Q86YD7 464 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 OR5AU1Q8NGC0 362 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 COQ2Q96H96 371 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 MED13Q9UHV7 2174 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 SELLP14151 372 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 GCSAMLQ5JQS6 135 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 TMEM14EPQ6UXP3 125 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 CA5BP1Q8WTZ4 195 aa15.46■□□□□ 0.07
USP48-204ENST00000400301 SRRM5B3KS81 715 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 NPIPB11E5RHQ5 1161 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 RRHO14718 337 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 C10orf91Q5T1B1 145 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 Q6ZSR3 168 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 OR8I2Q8N0Y5 310 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 WFIKKN1Q96NZ8 548 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 GNB4Q9HAV0 340 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 ZFHX2Q9C0A1 2572 aaPredicted RBP15.45■□□□□ 0.06
USP48-204ENST00000400301 C1QTNF9BB2RNN3 333 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BKO60814 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BJP06899 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BOP23527 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BBP33778 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BDP58876 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BCP62807 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST2H2BEQ16778 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BHQ93079 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BNQ99877 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 HIST1H2BMQ99879 126 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 ASCL3Q9NQ33 180 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 AMMECR1Q9Y4X0 333 aaPredicted RBP15.45■□□□□ 0.06
USP48-204ENST00000400301 FAM157AC9JC47 383 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 IGFBP2P18065 325 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 USF1P22415 310 aaPredicted RBP15.45■□□□□ 0.06
USP48-204ENST00000400301 SFRP2Q96HF1 295 aa15.45■□□□□ 0.06
USP48-204ENST00000400301 DLL1O00548 723 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 RPL27AP46776 148 aaKnown RBP15.44■□□□□ 0.06
USP48-204ENST00000400301 PAX9P55771 341 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 ERVFRD-1P60508 538 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 RNASEKQ6P5S7 137 aaKnown RBP15.44■□□□□ 0.06
USP48-204ENST00000400301 PERPQ96FX8 193 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 PLSCR4Q9NRQ2 329 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 WASHC3Q9Y3C0 194 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 OR4F17Q8NGA8 305 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 RAB1CQ92928 201 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 STARD4Q96DR4 205 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 MRPL37Q9BZE1 423 aaKnown RBP15.44■□□□□ 0.06
USP48-204ENST00000400301 WDR83OSQ9Y284 106 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 RND2P52198 227 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 COX19Q49B96 90 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 CD177Q8N6Q3 437 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 NOL4LQ96MY1 436 aaPredicted RBP15.44■□□□□ 0.06
USP48-204ENST00000400301 MBNL3Q9NUK0 354 aaKnown RBP15.44■□□□□ 0.06
USP48-204ENST00000400301 SAA2-SAA4A0A096LPE2 208 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 LINC00587B1AMM8 73 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 SAA2P0DJI9 122 aaPredicted RBP15.44■□□□□ 0.06
USP48-204ENST00000400301 C8orf88P0DMB2 117 aa15.44■□□□□ 0.06
USP48-204ENST00000400301 PRR7Q8TB68 274 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 DMRT1Q9Y5R6 373 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 TECTAO75443 2155 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 MC5RP33032 325 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 GNB2P62879 340 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 ZCCHC24Q8N2G6 241 aaKnown RBP15.43■□□□□ 0.06
USP48-204ENST00000400301 STXBP6Q8NFX7 210 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 RNF115Q9Y4L5 304 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 GTF3C1Q12789 2109 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 SCO2A0A1W2PP80 73 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 LINC00473A8K010 186 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 TMEM11P17152 192 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 WDR86Q86TI4 376 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.43■□□□□ 0.06
USP48-204ENST00000400301 OR4C13Q8NGP0 309 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 RAB1BQ9H0U4 201 aa15.43■□□□□ 0.06
USP48-204ENST00000400301 TMEM183BQ1AE95 376 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 DNAJC4Q9NNZ3 241 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 CGAP01215 116 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 HIST1H1BP16401 226 aaKnown RBP15.42■□□□□ 0.06
USP48-204ENST00000400301 HOXA4Q00056 320 aaPredicted RBP15.42■□□□□ 0.06
USP48-204ENST00000400301 FXYD3Q14802 87 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 TMEM30BQ3MIR4 351 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 Q56UQ5 140 aa15.42■□□□□ 0.06
USP48-204ENST00000400301 TMEM183AQ8IXX5 376 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms