RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 F2RL2O00254 374 aa11.65□□□□□ -0.54
SCAF4-202ENST00000399804 RPL11P62913 178 aaKnown RBP11.65□□□□□ -0.54
SCAF4-202ENST00000399804 FAM53AQ6NSI3 398 aaPredicted RBP11.65□□□□□ -0.54
SCAF4-202ENST00000399804 WFDC1Q9HC57 220 aa11.65□□□□□ -0.54
SCAF4-202ENST00000399804 CYTL1Q9NRR1 136 aa11.65□□□□□ -0.54
SCAF4-202ENST00000399804 TMEM178BH3BS89 294 aa11.65□□□□□ -0.55
SCAF4-202ENST00000399804 CD55P08174 381 aa11.65□□□□□ -0.55
SCAF4-202ENST00000399804 DLK1P80370 383 aa11.65□□□□□ -0.55
SCAF4-202ENST00000399804 FAM216AQ8WUB2 273 aa11.65□□□□□ -0.55
SCAF4-202ENST00000399804 BTF3L4Q96K17 158 aa11.65□□□□□ -0.55
SCAF4-202ENST00000399804 PFDN5Q99471 154 aa11.65□□□□□ -0.55
SCAF4-202ENST00000399804 RPUSD1Q9UJJ7 312 aaKnown RBP11.65□□□□□ -0.55
SCAF4-202ENST00000399804 TRBV23-1A0A0A0MS06 115 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 REG1AP05451 166 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 MEOX2P50222 304 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 BSXQ3C1V8 233 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 CLEC2AQ6UVW9 174 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 ST6GALNAC3Q8NDV1 305 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 OR1L4Q8NGR5 311 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 TMEM204Q9BSN7 226 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 K7EQM0 130 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 SSTP61278 116 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 Q8NFD4 153 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 OSR1Q8TAX0 266 aaPredicted RBP11.64□□□□□ -0.55
SCAF4-202ENST00000399804 BORCS7Q96B45 105 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 A0A0G2JRQ6 117 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 C1QTNF9BB2RNN3 333 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 E7EQL1 145 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 CA2P00918 260 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 CGAP01215 116 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 C1QTNF9P0C862 333 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 LMO1P25800 156 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 S100A12P80511 92 aa11.64□□□□□ -0.55
SCAF4-202ENST00000399804 NEU4Q8WWR8 484 aaPredicted RBP11.64□□□□□ -0.55
SCAF4-202ENST00000399804 AURKAIP1Q9NWT8 199 aaPredicted RBP11.64□□□□□ -0.55
SCAF4-202ENST00000399804 PPP1R2P9O14990 202 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 LGALS7P47929 136 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 CNN1P51911 297 aaKnown RBP11.63□□□□□ -0.55
SCAF4-202ENST00000399804 ERVFC1-1P60608 527 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 SEM1Q6ZVN7 128 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 ZNF525Q8N782 197 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 ZNF672Q499Z4 452 aaPredicted RBP11.63□□□□□ -0.55
SCAF4-202ENST00000399804 Q6ZRM9 215 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 RASL11BQ9BPW5 248 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 TPPP3Q9BW30 176 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 SMDT1Q9H4I9 107 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 PLAUP00749 431 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 ATP5J2P56134 94 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 LRRC75BQ2VPJ9 315 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 PDZD11Q5EBL8 140 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 RCC1LQ96I51 464 aaKnown RBP11.63□□□□□ -0.55
SCAF4-202ENST00000399804 TMEM167BQ9NRX6 74 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 CBLN4Q9NTU7 201 aa11.63□□□□□ -0.55
SCAF4-202ENST00000399804 ZNF320A2RRD8 509 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 LINC00473A8K010 186 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 GNG7O60262 68 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 LY6HO94772 140 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 CSN1S1P47710 185 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 NCMAPQ5T1S8 102 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 ZNF788Q6ZQV5 615 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 COA4Q9NYJ1 87 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 TIMM9Q9Y5J7 89 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 FBP1P09467 338 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 PNRC1Q12796 327 aaPredicted RBP11.62□□□□□ -0.55
SCAF4-202ENST00000399804 EIF4E3Q8N5X7 224 aaKnown RBP11.62□□□□□ -0.55
SCAF4-202ENST00000399804 PSMG3Q9BT73 122 aaPredicted RBP11.62□□□□□ -0.55
SCAF4-202ENST00000399804 NUP210LQ5VU65 1888 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 NPIPB11E5RHQ5 1161 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 SLC31A2O15432 143 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 CXorf1O96002 111 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 OR9G9P0C7N8 305 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 RND2P52198 227 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 MEF2BQ02080 365 aaPredicted RBP11.62□□□□□ -0.55
SCAF4-202ENST00000399804 OR2T6Q8NHC8 308 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 GAFA1Q96PS6 74 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 NAT8Q9UHE5 227 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 OR5B3Q8NH48 314 aa11.62□□□□□ -0.55
SCAF4-202ENST00000399804 RBFOX2O43251 390 aaKnown RBP eCLIP11.61□□□□□ -0.555e-7■■□□□ 14.3
SCAF4-202ENST00000399804 SLC25A5P05141 298 aaKnown RBP11.61□□□□□ -0.55
SCAF4-202ENST00000399804 TMEM11P17152 192 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 TMEM200BQ69YZ2 307 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 SSBP3Q9BWW4 388 aaPredicted RBP11.61□□□□□ -0.55
SCAF4-202ENST00000399804 LINC00869P0C866 280 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 LCN2P80188 198 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 TFF3Q07654 80 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 C10orf113Q5VZT2 155 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 HEPN1Q6WQI6 88 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 CSPG4Q6UVK1 2322 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 HSPB1P04792 205 aaKnown RBP11.61□□□□□ -0.55
SCAF4-202ENST00000399804 GNLYP22749 145 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 PPOXP50336 477 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 KDF1Q8NAX2 398 aaPredicted RBP11.61□□□□□ -0.55
SCAF4-202ENST00000399804 SAMD10Q9BYL1 202 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 DPM3Q9P2X0 92 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 HSPB7Q9UBY9 170 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 COL4A2P08572 1712 aa11.61□□□□□ -0.55
SCAF4-202ENST00000399804 NOTCH3Q9UM47 2321 aa11.6□□□□□ -0.55
SCAF4-202ENST00000399804 FGF16O43320 207 aa11.6□□□□□ -0.55
SCAF4-202ENST00000399804 SAA1P0DJI8 122 aaPredicted RBP11.6□□□□□ -0.55
SCAF4-202ENST00000399804 ZNF585BQ52M93 769 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms