RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 YLPM1P49750 1951 aaKnown RBP10.96□□□□□ -0.66
CCDC3-202ENST00000378839 PCNX1Q96RV3 2341 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 CT45A6P0DMU7 189 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 CT45A5P0DMU8 189 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 CT45A7P0DMV0 189 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 RND2P52198 227 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 ARSJQ5FYB0 599 aaPredicted RBP10.96□□□□□ -0.66
CCDC3-202ENST00000378839 TEX36Q5VZQ5 186 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 DIRC2Q96SL1 478 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 LINC00574Q9H8X3 128 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 TRGV10A0A0A0MS01 117 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 C15orf61A6NNL5 157 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 MRPS11P82912 194 aaKnown RBP10.95□□□□□ -0.66
CCDC3-202ENST00000378839 OR51G1Q8NGK1 321 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 FAM122AQ96E09 287 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 ACTR3CQ9C0K3 210 aaPredicted RBP10.95□□□□□ -0.66
CCDC3-202ENST00000378839 PRDM13Q9H4Q3 707 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 SSUH2Q9Y2M2 353 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 SMCO3A2RU48 225 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 C16orf97H3BN30 126 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 ITGB1BP1O14713 200 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 TMPRSS2O15393 492 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 MIC13Q5XKP0 118 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 ABHD5Q8WTS1 349 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 NEUROG1Q92886 237 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 SMIM7Q9BQ49 75 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 PARLQ9H300 379 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM14BQ9NUH8 114 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 JKAMPQ9P055 326 aa10.95□□□□□ -0.66
CCDC3-202ENST00000378839 DCHS2Q6V1P9 2916 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 PPP1R2P9O14990 202 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BKO60814 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 OPN1MWP04001 364 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BJP06899 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 OPN1MW2P0DN77 364 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 OPN1MW3P0DN78 364 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BOP23527 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BBP33778 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BDP58876 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BCP62807 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 RPL23P62829 140 aaKnown RBP10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST2H2BEQ16778 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.94□□□□□ -0.66
CCDC3-202ENST00000378839 OR4F5Q8NH21 305 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BHQ93079 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 OR4F4Q96R69 305 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BNQ99877 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 HIST1H2BMQ99879 126 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 CEP295Q9C0D2 2601 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 B4DEV8 164 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 SEC14L6B5MCN3 397 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 MKRN2OSH3BPM6 223 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 KBTBD11O94819 623 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 IL6RP08887 468 aaPredicted RBP10.94□□□□□ -0.66
CCDC3-202ENST00000378839 CCL3L1P16619 93 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 TMPRSS3P57727 454 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 ERVK-16P61578 105 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 OR4S2Q8NH73 311 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 GGTLC1Q9BX51 225 aa10.94□□□□□ -0.66
CCDC3-202ENST00000378839 C17orf100A8MU93 164 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 MBP02144 154 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 ATP5G3P48201 142 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 CDC34P49427 236 aaPredicted RBP10.93□□□□□ -0.66
CCDC3-202ENST00000378839 RAB7AP51149 207 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 PNRC1Q12796 327 aaPredicted RBP10.93□□□□□ -0.66
CCDC3-202ENST00000378839 ADIRFQ15847 76 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 SLC25A48Q6ZT89 311 aaKnown RBP10.93□□□□□ -0.66
CCDC3-202ENST00000378839 MOB3BQ86TA1 216 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 ZNF709Q8N972 641 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 CORO2AQ92828 525 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 DERL1Q9BUN8 251 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM242Q9NWH2 141 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 RPUSD1Q9UJJ7 312 aaKnown RBP10.93□□□□□ -0.66
CCDC3-202ENST00000378839 LSM4Q9Y4Z0 139 aaKnown RBP10.93□□□□□ -0.66
CCDC3-202ENST00000378839 TSTD3H0UI37 97 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 IFNA1P01562 189 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 PSMB3P49720 205 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 DIAPH2-AS1Q14236 149 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 LYPD2Q6UXB3 125 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM108Q6UXF1 575 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 CYP2G1PQ6ZSU1 146 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 C16orf82Q7Z2V1 217 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 FAM216AQ8WUB2 273 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 RND1Q92730 232 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 ELOVL1Q9BW60 279 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 SELENOVP59797 346 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 UBE2G2P60604 165 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 SPATA31B1PQ5VZV4 182 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 SSMEM1Q8WWF3 244 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 NAT8Q9UHE5 227 aa10.93□□□□□ -0.66
CCDC3-202ENST00000378839 FOXA2Q9Y261 457 aaPredicted RBP10.93□□□□□ -0.66
CCDC3-202ENST00000378839 PRRG2O14669 202 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 CA2P00918 260 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM241Q24JQ0 296 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 SPACA3Q8IXA5 215 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 NECAP1Q8NC96 275 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 FRZBQ92765 325 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 FAM210BQ96KR6 192 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 TMEM204Q9BSN7 226 aa10.92□□□□□ -0.66
CCDC3-202ENST00000378839 ZNF835Q9Y2P0 537 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms