RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 NSG2Q9Y328 171 aa10.38□□□□□ -0.75
VPS28-202ENST00000377348 CGB1A6NKQ9 187 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 G3V4G9 280 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 I3L521 148 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 CCL24O00175 119 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 PRH1P02810 166 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 TRGV3P03979 118 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 OR9G9P0C7N8 305 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 CD33P20138 364 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 CD40LGP29965 261 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 MAS1LP35410 378 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 MYCNOSP40205 109 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 BAK1Q16611 211 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 SP6Q3SY56 376 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 LINC00482Q8N8I6 264 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 TMEM68Q96MH6 324 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 P2RX4Q99571 388 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 SDHCQ99643 169 aaPredicted RBP10.37□□□□□ -0.75
VPS28-202ENST00000377348 SPIN2AQ99865 258 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 SPIN2BQ9BPZ2 258 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 SLC2A8Q9NY64 477 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 GPR132Q9UNW8 380 aa10.37□□□□□ -0.75
VPS28-202ENST00000377348 C14orf166Q9Y224 244 aaKnown RBP10.37□□□□□ -0.75
VPS28-202ENST00000377348 C3orf85A0A1B0GTC6 90 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 H0Y980 276 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 RBMXL2O75526 392 aaKnown RBP10.36□□□□□ -0.75
VPS28-202ENST00000377348 SLC6A1P30531 599 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 ECI1P42126 302 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 RAB25P57735 213 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 SURF2Q15527 256 aaPredicted RBP10.36□□□□□ -0.75
VPS28-202ENST00000377348 CNPY1Q3B7I2 92 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 OXLD1Q5BKU9 147 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 CCDC71LQ8N9Z2 235 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 ADAD2Q8NCV1 583 aaKnown RBP10.36□□□□□ -0.75
VPS28-202ENST00000377348 WFDC9Q8NEX5 89 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 OR11H1Q8NG94 326 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 SEC22AQ96IW7 307 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 SLA2Q9H6Q3 261 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 FAM212BQ9NTI7 297 aaPredicted RBP10.36□□□□□ -0.75
VPS28-202ENST00000377348 SCP2D1Q9UJQ7 156 aa10.36□□□□□ -0.75
VPS28-202ENST00000377348 H3BUA1 57 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 REG1AP05451 166 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 SERPINE2P07093 398 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 LGALS1P09382 135 aaKnown RBP10.35□□□□□ -0.75
VPS28-202ENST00000377348 AREGP15514 252 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 IGLL1P15814 213 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 FAUP35544 74 aaKnown RBP10.35□□□□□ -0.75
VPS28-202ENST00000377348 AP3S2P59780 193 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 OR2B8PP59922 312 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 ZNF45Q02386 682 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 IZUMO4Q1ZYL8 232 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 ZNF57Q68EA5 555 aaPredicted RBP10.35□□□□□ -0.75
VPS28-202ENST00000377348 TTC9CQ8N5M4 171 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 GDPD1Q8N9F7 314 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 COMMD5Q9GZQ3 224 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 BATF3Q9NR55 127 aa10.35□□□□□ -0.75
VPS28-202ENST00000377348 TEX13DA0A0J9YY54 714 aaPredicted RBP10.34□□□□□ -0.75
VPS28-202ENST00000377348 TEX50A0A1B0GTY4 177 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 LINC00854A0A1B0GVQ3 168 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 DBX1A6NMT0 343 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 OR5AC1P0C628 307 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 RUNX1Q01196 453 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 FHL3Q13643 280 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 TRIM16LQ309B1 348 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 SAMD5Q5TGI4 173 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 OR10W1Q8NGF6 305 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 OR1N2Q8NGR9 330 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 TMEM230Q96A57 120 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 NAA60Q9H7X0 242 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 DNAH3Q8TD57 4116 aa10.34□□□□□ -0.75
VPS28-202ENST00000377348 IGHV4OR15-8A0A075B7B6 117 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 A0A087WW49 117 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 C13orf42A0A1B0GVH6 325 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 CRYM-AS1A6NIL9 109 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 NPIPB5A8MRT5 1133 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 SNAPC5O75971 98 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 IGKV1-5P01602 117 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 UCP1P25874 307 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 RHOGP84095 191 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 TRIQKQ629K1 86 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 H2BFWTQ7Z2G1 175 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 HINT2Q9BX68 163 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 QTRT1Q9BXR0 403 aaKnown RBP10.33□□□□□ -0.76
VPS28-202ENST00000377348 AKIP1Q9NQ31 210 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 PRR13Q9NZ81 148 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 OR51B2Q9Y5P1 312 aa10.33□□□□□ -0.76
VPS28-202ENST00000377348 A0A0G2JRQ6 117 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 IGLC7A0M8Q6 106 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 C15orf61A6NNL5 157 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 OR2J3O76001 311 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 BRI3O95415 125 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 IL7P13232 177 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 CTRB1P17538 263 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 PSMB6P28072 239 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 INPP1P49441 399 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 AKR1C2P52895 323 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 SLURP1P55000 103 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 ZNF616Q08AN1 781 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 CTRB2Q6GPI1 263 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 SLC25A42Q86VD7 318 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms