RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 C20orf141Q9NUB4 165 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 TMEM56-RWDD3S4R434 201 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 SAP30O75446 220 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 LEPROTL1O95214 131 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 HLA-DRB1P01911 266 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 CCL3P10147 92 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 LPAR6P43657 344 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 MFAP2P55001 183 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 C16orf82Q7Z2V1 217 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 DTX1Q86Y01 620 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 C16orf92Q96LL3 132 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 SNHG12Q9BXW3 62 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 MRPS16Q9Y3D3 137 aaKnown RBP7.42□□□□□ -1.22
SYNE1-206ENST00000367253 CASP8AP2Q9UKL3 1982 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 MED12Q93074 2177 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 RIF1Q5UIP0 2472 aaKnown RBP7.42□□□□□ -1.22
SYNE1-206ENST00000367253 K7N7A8 449 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 HMGN4O00479 90 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 PRSS23O95084 383 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 C1QAP02745 245 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 IFITM1P13164 125 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 SLC25A45Q8N413 288 aa7.42□□□□□ -1.22
SYNE1-206ENST00000367253 ZNF703Q9H7S9 590 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-206ENST00000367253 PAGE4O60829 102 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CD59P13987 128 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 FOLR2P14207 255 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 RPS27P42677 84 aaKnown RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 LYZP61626 148 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 PSG5Q15238 335 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 SPRED2Q7Z698 418 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 ZNF479Q96JC4 524 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 RBM38Q9H0Z9 239 aaKnown RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 OR2W1Q9Y3N9 320 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 TRAV8-4A0A0B4J246 113 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 DNAL4O96015 105 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CD300EQ496F6 205 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 TMEM179BQ7Z7N9 219 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 BCL2L10Q9HD36 194 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 TMEM30AQ9NV96 361 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 GVINP1Q7Z2Y8 2422 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 ZNF646O15015 1829 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 EPOPA6NHQ4 379 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 M0QXV9 152 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 SRSF10O75494 262 aaKnown RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CXCL3P19876 107 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 EVI2AP22794 236 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 IGFBP6P24592 240 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CRYBB2P43320 205 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 TMEM258P61165 79 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 ZP4Q12836 540 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 ZNF345Q14585 488 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 KIRREL2Q6UWL6 708 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 ACACAQ13085 2346 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 ARID2Q68CP9 1835 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 HLA-DQA1P01909 254 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 PRSS2P07478 247 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CDKN1AP38936 164 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 PTGDSP41222 190 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CA7P43166 264 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 SIGLEC15Q6ZMC9 328 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 SNRNP40Q96DI7 357 aaKnown RBP7.41□□□□□ -1.22
SYNE1-206ENST00000367253 Q96MF0 132 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 GPR35Q9HC97 309 aa7.41□□□□□ -1.22
SYNE1-206ENST00000367253 CTXND1A0A1B0GTU2 59 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 IGHV2-70P01814 119 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 TRGV3P03979 118 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 ZNF137PP52743 207 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 RBM3P98179 157 aaKnown RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 WDR25Q64LD2 544 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 TBC1D26Q86UD7 250 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 OR9G1Q8NH87 305 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 SLC25A37Q9NYZ2 338 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 J3QLI3 93 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 CTAG2O75638 210 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 LHBP01229 141 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 CTSDP07339 412 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 CCL2P13500 99 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 MUC1P15941 1255 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 RPL27AP46776 148 aaKnown RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 LSM6P62312 80 aaKnown RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 ZNF324BQ6AW86 544 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-206ENST00000367253 ZIC4Q8N9L1 334 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 ARHGAP5-AS1Q96IT6 56 aa7.4□□□□□ -1.22
SYNE1-206ENST00000367253 PLPP2O43688 288 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 CGB7P0DN87 165 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 ZNF121P58317 390 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-206ENST00000367253 MDP1Q86V88 176 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 ZNF683Q8IZ20 524 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 HMGCLL1Q8TB92 370 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 KLF2Q9Y5W3 355 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-206ENST00000367253 NUP205Q92621 2012 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 FAM110DQ8TAY7 271 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-206ENST00000367253 TMEM101Q96IK0 257 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 DPM3Q9P2X0 92 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 CHD5Q8TDI0 1954 aa7.4□□□□□ -1.23
SYNE1-206ENST00000367253 TRGV2A0A075B6R0 118 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 IGHV3OR16-10A0A075B7F0 116 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 A0A1B0GU03 582 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 A8MWL6 223 aa7.39□□□□□ -1.23
SYNE1-206ENST00000367253 A8MWV9 139 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms