RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 COPZ2Q9P299 210 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 A0A0G2JLM5 398 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 TEX22C9J3V5 150 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 H0Y980 276 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 KRASP01116 189 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 CTSDP07339 412 aaPredicted RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 IL6RP08887 468 aaPredicted RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 OR8U8P0C7N1 319 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 IGLL1P15814 213 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 RPA2P15927 270 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 FAUP35544 74 aaKnown RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 G6PCP35575 357 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 ETV6P41212 452 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 AP3S2P59780 193 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 ZNF616Q08AN1 781 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 SURF2Q15527 256 aaPredicted RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 OXLD1Q5BKU9 147 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 CADM3Q8N126 398 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 TRIM63Q969Q1 353 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 MRGPRFQ96AM1 343 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 COMMD5Q9GZQ3 224 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 SCP2D1Q9UJQ7 156 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 C14orf166Q9Y224 244 aaKnown RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 TRAV3A0A0B4J244 114 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 C13orf42A0A1B0GVH6 325 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 HMX3A6NHT5 357 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 IGHV3-11P01762 117 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 DEFA6Q01524 100 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 BEAN1Q3B7T3 259 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 TTC9CQ8N5M4 171 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 OR51S1Q8NGJ8 323 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 OR6Q1Q8NGQ2 317 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 OR1N2Q8NGR9 330 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 DPF1Q92782 380 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 MCRIP2Q9BUT9 160 aaKnown RBP13.15□□□□□ -0.3
CLN3-203ENST00000357806 GPR61Q9BZJ8 451 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 MCUBQ9NWR8 336 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 ZNF257Q9Y2Q1 563 aa13.15□□□□□ -0.3
CLN3-203ENST00000357806 E7EUB6 86 aa13.14□□□□□ -0.31
CLN3-203ENST00000357806 SERPINE2P07093 398 aa13.14□□□□□ -0.31
CLN3-203ENST00000357806 TOMM5Q8N4H5 51 aa13.14□□□□□ -0.31
CLN3-203ENST00000357806 ALX4Q9H161 411 aaPredicted RBP13.14□□□□□ -0.31
CLN3-203ENST00000357806 NOTCH3Q9UM47 2321 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 C3orf85A0A1B0GTC6 90 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 NPIPB5A8MRT5 1133 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 B3GALNT1O75752 331 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 SNAPC5O75971 98 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 MYOD1P15172 320 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 OR2B8PP59922 312 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 KLF9Q13886 244 aaPredicted RBP13.13□□□□□ -0.31
CLN3-203ENST00000357806 KPRPQ5T749 579 aaPredicted RBP13.13□□□□□ -0.31
CLN3-203ENST00000357806 THOC7Q6I9Y2 204 aaKnown RBP13.13□□□□□ -0.31
CLN3-203ENST00000357806 DEDD2Q8WXF8 326 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 USMG5Q96IX5 58 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 TP53RKQ96S44 253 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 TSC22D3Q99576 134 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 NOTCH1P46531 2555 aa13.13□□□□□ -0.31
CLN3-203ENST00000357806 A0A1B0GW64 132 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 FAM223BA6NKX1 122 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 LINC01619G3V211 115 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 DHFRP00374 187 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 DEFA5Q01523 94 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 H2BFWTQ7Z2G1 175 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 FAM223AQ8IWN6 122 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 SEC22AQ96IW7 307 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 SCGB3A2Q96PL1 93 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 SRSF8Q9BRL6 282 aaKnown RBP13.12□□□□□ -0.31
CLN3-203ENST00000357806 QTRT1Q9BXR0 403 aaKnown RBP13.12□□□□□ -0.31
CLN3-203ENST00000357806 SRRQ9GZT4 340 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 C5orf66Q9H5L9 145 aa13.12□□□□□ -0.31
CLN3-203ENST00000357806 IGHV4OR15-8A0A075B7B6 117 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 A0A087WW49 117 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 CGB1A6NKQ9 187 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 IGKV1-39P01597 117 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 PRH1P02810 166 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 IGKV1D-39P04432 117 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 HSPB1P04792 205 aaKnown RBP13.11□□□□□ -0.31
CLN3-203ENST00000357806 AREGP15514 252 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 PSMB6P28072 239 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 RHOGP84095 191 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 GDPD1Q8N9F7 314 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 RTBDNQ9BSG5 229 aaPredicted RBP13.11□□□□□ -0.31
CLN3-203ENST00000357806 FKBP11Q9NYL4 201 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 PRNDQ9UKY0 176 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 GPR132Q9UNW8 380 aa13.11□□□□□ -0.31
CLN3-203ENST00000357806 TRBV9A0A0B4J1U6 114 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 C15orf61A6NNL5 157 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 ATG12O94817 140 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 CRYGCP07315 174 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 CTRB1P17538 263 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 AKR1C2P52895 323 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 ZNF45Q02386 682 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 TRIM16LQ309B1 348 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 CTRB2Q6GPI1 263 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 HSD17B13Q7Z5P4 300 aaPredicted RBP13.1□□□□□ -0.31
CLN3-203ENST00000357806 OR1L8Q8NGR8 309 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 NAA60Q9H7X0 242 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 AKIP1Q9NQ31 210 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 NSG2Q9Y328 171 aa13.1□□□□□ -0.31
CLN3-203ENST00000357806 OR51B2Q9Y5P1 312 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms