RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 CEBPDP49716 269 aaPredicted RBP9.97□□□□□ -0.81
COL9A1-202ENST00000357250 GFRA1P56159 465 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 SFRP2Q96HF1 295 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 PIMREGQ9BSJ6 248 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 ELOVL1Q9BW60 279 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 RPRMQ9NS64 109 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 SOX21Q9Y651 276 aaPredicted RBP9.97□□□□□ -0.81
COL9A1-202ENST00000357250 A0A087WWC5 75 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 APOBEC3AP31941 199 aaPredicted RBP9.97□□□□□ -0.81
COL9A1-202ENST00000357250 CSRP2Q16527 193 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 PAPPA-AS1Q5QFB9 102 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 RTN4RL2Q86UN3 420 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 RCC1LQ96I51 464 aaKnown RBP9.97□□□□□ -0.81
COL9A1-202ENST00000357250 LOC101059948A0A1B0GTJ6 334 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 LNP1A1A4G5 178 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 C12orf77C9JDV5 145 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 PF4V1P10720 104 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 TMEM190Q8WZ59 177 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 SH3BGRL3Q9H299 93 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 DMRT1Q9Y5R6 373 aa9.97□□□□□ -0.81
COL9A1-202ENST00000357250 CACNA1BQ00975 2339 aa9.96□□□□□ -0.81
COL9A1-202ENST00000357250 MED13LQ71F56 2210 aa9.96□□□□□ -0.81
COL9A1-202ENST00000357250 IGHV3-72A0A0B4J1Y9 119 aa9.96□□□□□ -0.81
COL9A1-202ENST00000357250 HLA-DRB1P01911 266 aa9.96□□□□□ -0.81
COL9A1-202ENST00000357250 CRYBB3P26998 211 aa9.96□□□□□ -0.81
COL9A1-202ENST00000357250 FCGR2BP31994 310 aaPredicted RBP9.96□□□□□ -0.81
COL9A1-202ENST00000357250 NPIPB7O75200 414 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 RARRES2Q99969 163 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 IQCF6A8MYZ5 107 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 NAT1P18440 290 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 EFNB1P98172 346 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 WDR25Q64LD2 544 aaPredicted RBP9.96□□□□□ -0.82
COL9A1-202ENST00000357250 EEF1AKMT3Q96AZ1 226 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 NPCDR1Q9BY65 106 aa9.96□□□□□ -0.82
COL9A1-202ENST00000357250 ANOS1P23352 680 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 RNFT1Q5M7Z0 435 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 SLC25A34Q6PIV7 304 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 OR1N2Q8NGR9 330 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 IFI27L2Q9H2X8 130 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 TUBA4BQ9H853 241 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 MYO7BQ6PIF6 2116 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 IGKV3-7A0A075B6H7 116 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 A0A1B0GW15 77 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 COX6B1P14854 86 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 SPATA45Q537H7 98 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 CYB5R2Q6BCY4 276 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 RTBDNQ9BSG5 229 aaPredicted RBP9.95□□□□□ -0.82
COL9A1-202ENST00000357250 CUL9Q8IWT3 2517 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 TGIF2-C20orf24A0A0A6YYL0 155 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 PDLIM4P50479 330 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 ATP5G2Q06055 141 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 C1QL2Q7Z5L3 287 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 MUC15Q8N387 334 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 RNASEH2CQ8TDP1 164 aaKnown RBP9.95□□□□□ -0.82
COL9A1-202ENST00000357250 NPIPB3Q92617 1050 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 J3KRW8 73 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 RAMP1O60894 148 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 PPP1R17O96001 155 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 RFPL3SP0C7P2 107 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 NPPCP23582 126 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 DDTP30046 118 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 LINC00518Q8N0U6 118 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 NEU4Q8WWR8 484 aaPredicted RBP9.95□□□□□ -0.82
COL9A1-202ENST00000357250 DNAH12Q6ZR08 3092 aa9.95□□□□□ -0.82
COL9A1-202ENST00000357250 IL6RP08887 468 aaPredicted RBP9.94□□□□□ -0.82
COL9A1-202ENST00000357250 CECR9P0C854 216 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 NMUP48645 174 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 KLRB1Q12918 225 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 Q6AWC8 147 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 ZNF841Q6ZN19 808 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 TMEM183AQ8IXX5 376 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 FAM89BQ8N5H3 189 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 MIEN1Q9BRT3 115 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 CX3CL1P78423 397 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 ZNF385CQ66K41 422 aaPredicted RBP9.94□□□□□ -0.82
COL9A1-202ENST00000357250 FAM53AQ6NSI3 398 aaPredicted RBP9.94□□□□□ -0.82
COL9A1-202ENST00000357250 OR10S1Q8NGN2 331 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 FLVCR1-AS1Q8TAF5 88 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 SRSF12Q8WXF0 261 aaKnown RBP9.94□□□□□ -0.82
COL9A1-202ENST00000357250 DDB2Q92466 427 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 PHLDA3Q9Y5J5 127 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 KBTBD11-OT1A0A1B0GTJ5 212 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 J3QRE1 110 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 LYPD3O95274 346 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 SRIP30626 198 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 TCTAP57738 103 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 HBBP68871 147 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 FXYD3Q14802 87 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 WFDC3Q8IUB2 231 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 TMEM106BQ9NUM4 274 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 FOXJ2Q9P0K8 574 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 TRBV6-7A0A0A0MS04 114 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 IGKV1D-43A0A0B4J1Z2 117 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 FABP2P12104 132 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 MDKP21741 143 aaPredicted RBP9.94□□□□□ -0.82
COL9A1-202ENST00000357250 SMUG1Q53HV7 270 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 DPM3Q9P2X0 92 aa9.94□□□□□ -0.82
COL9A1-202ENST00000357250 RNF222A6NCQ9 220 aa9.93□□□□□ -0.82
COL9A1-202ENST00000357250 RBFOX2O43251 390 aaKnown RBP eCLIP9.93□□□□□ -0.82
COL9A1-202ENST00000357250 PLAUP00749 431 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 282.5 ms