RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ABHD17AQ96GS6 310 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 PXMP4Q9Y6I8 212 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 ANKRD11Q6UB99 2663 aaPredicted RBP17.88■□□□□ 0.45
SHMT1-202ENST00000352886 IFITM10A6NMD0 228 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 UBE2G2P60604 165 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 HSPE1P61604 102 aaKnown RBP17.88■□□□□ 0.45
SHMT1-202ENST00000352886 NECAP1Q8NC96 275 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 ABHD5Q8WTS1 349 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 ZCCHC14Q8WYQ9 949 aaKnown RBP17.88■□□□□ 0.45
SHMT1-202ENST00000352886 FRZBQ92765 325 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 ACACAQ13085 2346 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 TRGC1P0CF51 173 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 NPPCP23582 126 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 ZCCHC24Q8N2G6 241 aaKnown RBP17.87■□□□□ 0.45
SHMT1-202ENST00000352886 SLC24A4Q8NFF2 622 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 LINC00574Q9H8X3 128 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 MYOD1P15172 320 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 NDUFB7P17568 137 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 NPY1RP25929 384 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 OR51G1Q8NGK1 321 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 CORO2AQ92828 525 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 ZNRD1Q9P1U0 126 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 SH3BGRL2Q9UJC5 107 aa17.87■□□□□ 0.45
SHMT1-202ENST00000352886 RPUSD1Q9UJJ7 312 aaKnown RBP17.87■□□□□ 0.45
SHMT1-202ENST00000352886 TGOLN2O43493 480 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 HRASP01112 189 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 ATP5G3P48201 142 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 TDGF1P3P51864 188 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 TMEM249Q2WGJ8 235 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 CST9LP1Q5W188 147 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 CISD2Q8N5K1 135 aaKnown RBP17.86■□□□□ 0.45
SHMT1-202ENST00000352886 NPVFQ9HCQ7 196 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 ENY2Q9NPA8 101 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 TP53TG5Q9Y2B4 290 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 PCNX1Q96RV3 2341 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 DPRXA6NFQ7 191 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 H7BYZ3 331 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 PFN1P07737 140 aaKnown RBP17.86■□□□□ 0.45
SHMT1-202ENST00000352886 OR4A8P0C604 315 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 ADIPOQQ15848 244 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 C4orf17Q53FE4 359 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 ARSJQ5FYB0 599 aaPredicted RBP17.86■□□□□ 0.45
SHMT1-202ENST00000352886 SLC25A48Q6ZT89 311 aaKnown RBP17.86■□□□□ 0.45
SHMT1-202ENST00000352886 SSMEM1Q8WWF3 244 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 C1orf159Q96HA4 380 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 HINT2Q9BX68 163 aa17.86■□□□□ 0.45
SHMT1-202ENST00000352886 LSM4Q9Y4Z0 139 aaKnown RBP17.86■□□□□ 0.45
SHMT1-202ENST00000352886 TNFRSF1AP19438 455 aa17.85■□□□□ 0.45
SHMT1-202ENST00000352886 SSTP61278 116 aa17.85■□□□□ 0.45
SHMT1-202ENST00000352886 TNCP24821 2201 aa17.85■□□□□ 0.45
SHMT1-202ENST00000352886 hADV38S2A0JD32 116 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 C17orf100A8MU93 164 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 RD3LP0DJH9 198 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 ARL14EPLP0DKL9 152 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 BSPH1Q075Z2 132 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 ELOVL5Q9NYP7 299 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 OR51B2Q9Y5P1 312 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 ROS1P08922 2347 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 CA2P00918 260 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 IGKV1-16P04430 117 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 CT45A6P0DMU7 189 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 CT45A5P0DMU8 189 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 CT45A7P0DMV0 189 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 GALR1P47211 349 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 POU2AF1Q16633 256 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 OR10A7Q8NGE5 316 aa17.84■□□□□ 0.45
SHMT1-202ENST00000352886 NKX6-3A6NJ46 265 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 PHOX2AO14813 284 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 PDE6DO43924 150 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 GFI1BQ5VTD9 330 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 OR5B12Q96R08 314 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 LINC00312Q9Y6C7 94 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 GVINP1Q7Z2Y8 2422 aa17.83■□□□□ 0.45
SHMT1-202ENST00000352886 VENTXO95231 258 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 GNB1P62873 340 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 TMEM30BQ3MIR4 351 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 TEPPQ6URK8 271 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 ELOVL1Q9BW60 279 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 SLC35D1Q9NTN3 355 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 GAR1Q9NY12 217 aaKnown RBP17.83■□□□□ 0.44
SHMT1-202ENST00000352886 SLC25A10Q9UBX3 287 aaPredicted RBP17.83■□□□□ 0.44
SHMT1-202ENST00000352886 DMXL2Q8TDJ6 3036 aa17.83■□□□□ 0.44
SHMT1-202ENST00000352886 IL6RP08887 468 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-202ENST00000352886 STAG3L2P0CL84 134 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 STAG3L3P0CL85 134 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 S100A2P29034 98 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 C9orf152Q5JTZ5 239 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 OR5T1Q8NG75 326 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 KCNIP2Q9NS61 270 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 DMRT1Q9Y5R6 373 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 PPP1R2P9O14990 202 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 THBDP07204 575 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 SOD3P08294 240 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 RTL8BQ17RB0 113 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 RND1Q92730 232 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 ANAPC16Q96DE5 110 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 PYGO2Q9BRQ0 406 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 PRNDQ9UKY0 176 aa17.82■□□□□ 0.44
SHMT1-202ENST00000352886 SRRM4A7MD48 611 aaKnown RBP17.81■□□□□ 0.44
SHMT1-202ENST00000352886 J3QR06 171 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms