RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TRGV8A0A0C4DH27 118 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 RTP5Q14D33 572 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 DNASE2BQ8WZ79 361 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 PLAC1Q9HBJ0 212 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 RUNX1Q01196 453 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 TMEM249Q2WGJ8 235 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 NPCDR1Q9BY65 106 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 CBLN1P23435 193 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 SF3B6Q9Y3B4 125 aaKnown RBP11.44□□□□□ -0.58
COL6A3-202ENST00000347401 EFNB2P52799 333 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 SUMO2P61956 95 aaKnown RBP11.44□□□□□ -0.58
COL6A3-202ENST00000347401 SRSF12Q8WXF0 261 aaKnown RBP11.44□□□□□ -0.58
COL6A3-202ENST00000347401 TRBV20OR9-2A0A075B6H5 130 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 VKORC1L1Q8N0U8 176 aa11.44□□□□□ -0.58
COL6A3-202ENST00000347401 FAM181BA6NEQ2 426 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 COX7A1P24310 79 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 GCHFRP30047 84 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 TMEM187Q14656 261 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 NUTF2P61970 127 aaKnown RBP11.43□□□□□ -0.58
COL6A3-202ENST00000347401 ORMDL2Q53FV1 153 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 FAM106AQ4KMX7 169 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 MBNL2Q5VZF2 373 aaKnown RBP11.43□□□□□ -0.58
COL6A3-202ENST00000347401 OR4D11Q8NGI4 311 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 TM2D1Q9BX74 207 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 PGPA6NDG6 321 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 SRSF6Q13247 344 aaKnown RBP11.43□□□□□ -0.58
COL6A3-202ENST00000347401 DEFB109BQ30KR1 87 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 FAM90A1Q86YD7 464 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 ALKBH6Q3KRA9 238 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 MPZP25189 248 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 COL9A2Q14055 689 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-202ENST00000347401 BIVMQ86UB2 503 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 RNF182Q8N6D2 247 aa11.43□□□□□ -0.58
COL6A3-202ENST00000347401 NRXN2Q9P2S2 1712 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 ACSF3Q4G176 576 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-202ENST00000347401 hCG_38984A0A1B0GV85 526 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 STARD6P59095 220 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 NEU1Q99519 415 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 FAM159AQ6UWV7 190 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 KIR3DL3Q8N743 410 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 GTF3AQ92664 365 aaKnown RBP11.42□□□□□ -0.58
COL6A3-202ENST00000347401 RPP21Q9H633 154 aaKnown RBP11.42□□□□□ -0.58
COL6A3-202ENST00000347401 TINAGQ9UJW2 476 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 FOXC2Q99958 501 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 TMEM160Q9NX00 188 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 NLRC5Q86WI3 1866 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-202ENST00000347401 CT62P0C5K7 136 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 COL10A1Q03692 680 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 MGAT2Q10469 447 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 OSR1Q8TAX0 266 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-202ENST00000347401 AURKAIP1Q9NWT8 199 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-202ENST00000347401 TRAV1-1A0A0B4J248 108 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 RHOGP84095 191 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 GAGE2BQ13066 116 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 GAGE2EQ4V326 116 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 GAGE2DQ9UEU5 116 aa11.42□□□□□ -0.58
COL6A3-202ENST00000347401 A8MWV9 139 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 RRHO14718 337 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 RAX2Q96IS3 184 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 LINC00470Q9BZP3 86 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 C1QL1O75973 258 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 CNTFRP26992 372 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 FCGR2BP31994 310 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-202ENST00000347401 COX11Q9Y6N1 276 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 NAV3Q8IVL0 2385 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 CISD3P0C7P0 127 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 SNAI3Q3KNW1 292 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 OR52M1Q8NGK5 317 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 TRBV7-9A0A0J9YWB2 115 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 F2Z2F3 143 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 ZNF708P17019 499 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 GAGE13Q4V321 117 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 LHFPL4Q7Z7J7 247 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 OR11H4Q8NGC9 324 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 KCNK17Q96T54 332 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 ASCL2Q99929 193 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 OSTCQ9NRP0 149 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 TRBV24-1A0A075B6N3 115 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 UPK3AO75631 287 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 MIC13Q5XKP0 118 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 C19orf48Q6RUI8 117 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 SLC25A38Q96DW6 304 aa11.41□□□□□ -0.58
COL6A3-202ENST00000347401 DPM2O94777 84 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 UCP1P25874 307 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 LHX9Q9NQ69 397 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 CRYBB3P26998 211 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 RNFT1Q5M7Z0 435 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 DPH3Q96FX2 82 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 NABP2Q9BQ15 211 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 A0A1W2PRS3 328 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 GPX1P07203 203 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 SRP19P09132 144 aaKnown RBP11.4□□□□□ -0.58
COL6A3-202ENST00000347401 PDCD1Q15116 288 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 FSCN3Q9NQT6 498 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 PPIAL4EA0A075B759 164 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 PPIAL4DF5H284 164 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 PPIAL4FP0DN26 164 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 PPIAL4AQ9Y536 164 aa11.4□□□□□ -0.58
COL6A3-202ENST00000347401 F8VVB4 439 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms