RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PGPEP1LA6NFU8 196 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 CA2P00918 260 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 TNFRSF1AP19438 455 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 PAX5Q02548 391 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 TBR1Q16650 682 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 MLANAQ16655 118 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 CR1LQ2VPA4 569 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 MGST2Q99735 147 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 DERL1Q9BUN8 251 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 RALYQ9UKM9 306 aaKnown RBP8.48□□□□□ -1.05
LIMA1-201ENST00000341247 WDR83OSQ9Y284 106 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 MALRD1Q5VYJ5 2156 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 MAP1AP78559 2803 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-201ENST00000341247 C11orf94C9JXX5 98 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 MBP02144 154 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 CT45A6P0DMU7 189 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 CT45A5P0DMU8 189 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 CT45A7P0DMV0 189 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 C16orf82Q7Z2V1 217 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 Q8N7P7 452 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 OR13D1Q8NGV5 346 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 FAM210BQ96KR6 192 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 PARD6GQ9BYG4 376 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 OR51B2Q9Y5P1 312 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 PXMP4Q9Y6I8 212 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 TANC2Q9HCD6 1990 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 C15orf61A6NNL5 157 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 FCN3O75636 299 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 IGHV3-48P01763 117 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 GATA2P23769 480 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 TMEM241Q24JQ0 296 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 SPATA31B1PQ5VZV4 182 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 ELOVL1Q9BW60 279 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 COL25A1Q9BXS0 654 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 MRPL20Q9BYC9 149 aaKnown RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 hADV38S2A0JD32 116 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 NKX6-3A6NJ46 265 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 CLDN34H7C241 214 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 AP4M1O00189 453 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 NPY1RP25929 384 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 THBS3P49746 956 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 RPP30P78346 268 aaKnown RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 ARSJQ5FYB0 599 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 GFI1BQ5VTD9 330 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 SPNS3Q6ZMD2 512 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 SLC24A4Q8NFF2 622 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 OR10W1Q8NGF6 305 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 LINC01560Q8TB33 94 aa8.47□□□□□ -1.05
LIMA1-201ENST00000341247 ANKHD1Q8IWZ3 2542 aaKnown RBP8.47□□□□□ -1.05
LIMA1-201ENST00000341247 A0A087WWC5 75 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 FAM90A27PA6NNH2 459 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 PLAUP00749 431 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 ARL14EPLP0DKL9 152 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 NUBP1P53384 320 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 CENPVQ7Z7K6 275 aaPredicted RBP8.46□□□□□ -1.05
LIMA1-201ENST00000341247 ABHD5Q8WTS1 349 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 RPUSD1Q9UJJ7 312 aaKnown RBP8.46□□□□□ -1.05
LIMA1-201ENST00000341247 NAV3Q8IVL0 2385 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 PPIAL4EA0A075B759 164 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 IGHV3-72A0A0B4J1Y9 119 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 ZNF729A6NN14 1252 aaPredicted RBP8.46□□□□□ -1.05
LIMA1-201ENST00000341247 PPIAL4DF5H284 164 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 J3QR06 171 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 S100A9P06702 114 aaKnown RBP8.46□□□□□ -1.05
LIMA1-201ENST00000341247 PPIAL4FP0DN26 164 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 CHRNB4P30926 498 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 CHRNA7P36544 502 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 HSPE1P61604 102 aaKnown RBP8.46□□□□□ -1.05
LIMA1-201ENST00000341247 VWC2Q2TAL6 325 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 BSXQ3C1V8 233 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 ZNF439Q8NDP4 499 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 P2RX4Q99571 388 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 GGTLC1Q9BX51 225 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 DOK5Q9P104 306 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 NAT8Q9UHE5 227 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 GAB2Q9UQC2 676 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 PPIAL4AQ9Y536 164 aa8.46□□□□□ -1.05
LIMA1-201ENST00000341247 UBE2CO00762 179 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 RBFOX2O43251 390 aaKnown RBP eCLIP8.46□□□□□ -1.06
LIMA1-201ENST00000341247 CLN5O75503 358 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 IGFBP2P18065 325 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 NPPCP23582 126 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 B2MP61769 119 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 RPL23P62829 140 aaKnown RBP8.46□□□□□ -1.06
LIMA1-201ENST00000341247 C1orf87Q8N0U7 546 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 NUP37Q8NFH4 326 aa8.46□□□□□ -1.06
LIMA1-201ENST00000341247 NDUFB4O95168 129 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 APELAP0DMC3 54 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 GRNP28799 593 aaKnown RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 TMEM200BQ69YZ2 307 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 SEPSECSQ9HD40 501 aaKnown RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 NIT2Q9NQR4 276 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 A0A0U1RQK1 487 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 FOXH1O75593 365 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 KBTBD11O94819 623 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 IGHV2-5P01817 119 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 RD3LP0DJH9 198 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 SAA1P0DJI8 122 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 KIR2DS2P43631 304 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 PNRC1Q12796 327 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms