RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RNF7Q9UBF6 113 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 TNCP24821 2201 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 SPAARA0A1B0GVQ0 90 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 SRP19P09132 144 aaKnown RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 PRF1P14222 555 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 LGALS7P47929 136 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 UCP3P55916 312 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 ITLN1Q8WWA0 313 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 MARVELD3Q96A59 401 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 OPN3Q9H1Y3 402 aaPredicted RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 LSM4Q9Y4Z0 139 aaKnown RBP7.42□□□□□ -1.22
RTN3-202ENST00000339997 NAV3Q8IVL0 2385 aa7.42□□□□□ -1.22
RTN3-202ENST00000339997 IGKV1D-8A0A087WSZ0 117 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 CXorf51AA0A1B0GTR3 108 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 PQLC2LA1A4F0 135 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 C1QTNF9P0C862 333 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 FGF5P12034 268 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 PRRX1P54821 245 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 TTC32Q5I0X7 151 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 TEX30Q5JUR7 227 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 DNLZQ5SXM8 178 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 SLC25A47Q6Q0C1 308 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 DEFB104AQ8WTQ1 72 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H4GQ99525 98 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 CITED2Q99967 270 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 HEXA-AS1Q9H8Q6 139 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 SCO2A0A1W2PP80 73 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BKO60814 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 GHRHP01286 108 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 ISG15P05161 165 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BJP06899 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BOP23527 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BBP33778 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 UCP2P55851 309 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BDP58876 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BCP62807 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST2H2BEQ16778 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 DCAF10Q5QP82 559 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 GOLT1AQ6ZVE7 132 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BHQ93079 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 CTHRC1Q96CG8 243 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 MARS2Q96GW9 593 aaKnown RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BNQ99877 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 HIST1H2BMQ99879 126 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 SRXN1Q9BYN0 137 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 CA1P00915 261 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 IGKV3-20P01619 116 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 CEACAM1P13688 526 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 CIRBPQ14011 172 aaKnown RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 FHL5Q5TD97 284 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 SLC25A45Q8N413 288 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 STXBP6Q8NFX7 210 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 DDB2Q92466 427 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 RAB1CQ92928 201 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 ADTRPQ96IZ2 230 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 ZFP30Q9Y2G7 519 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 COL11A1P12107 1806 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 COL4A4P53420 1690 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 CRYABP02511 175 aaKnown RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 RFPL3SP0C7P2 107 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 GCSAMLQ5JQS6 135 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 BHLHA15Q7RTS1 189 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 C10orf35Q96D05 121 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 TTTY12Q9BZ98 90 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 SMDT1Q9H4I9 107 aa7.41□□□□□ -1.22
RTN3-202ENST00000339997 SLC25A10Q9UBX3 287 aaPredicted RBP7.41□□□□□ -1.22
RTN3-202ENST00000339997 IGHV3-66A0A0C4DH42 116 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 LINC01387J3KSC0 135 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 ZNF735P0CB33 412 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 COPS9Q8WXC6 57 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 REPIN1Q9BWE0 567 aaKnown RBP7.4□□□□□ -1.22
RTN3-202ENST00000339997 PRDM14Q9GZV8 571 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 RNASE7Q9H1E1 156 aaKnown RBP7.4□□□□□ -1.22
RTN3-202ENST00000339997 CARHSP1Q9Y2V2 147 aaKnown RBP7.4□□□□□ -1.22
RTN3-202ENST00000339997 TANC1Q9C0D5 1861 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 ERGP11308 486 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 HOXA5P20719 270 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 NABP2Q9BQ15 211 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 CISD1Q9NZ45 108 aaKnown RBP7.4□□□□□ -1.22
RTN3-202ENST00000339997 TCF19Q9Y242 345 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 SERF1AO75920 110 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 IGHV3-23P01764 117 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 HLA-DQA1P01909 254 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 CD1AP06126 327 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 FOLR2P14207 255 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 STPG3Q8N7X2 389 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 ZNF441Q8N8Z8 693 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 P2RX4Q99571 388 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 WNT5BQ9H1J7 359 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 ZNF319Q9P2F9 582 aa7.4□□□□□ -1.22
RTN3-202ENST00000339997 RELNP78509 3460 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 IGKV3OR2-268A0A0C4DH90 116 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 TMEM189A5PLL7 270 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 PPIAL4DF5H284 164 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 HOXC4P09017 264 aaPredicted RBP7.4□□□□□ -1.23
RTN3-202ENST00000339997 C12orf54Q6X4T0 127 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 RNF144BQ7Z419 303 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 KLHDC3Q9BQ90 382 aa7.4□□□□□ -1.23
RTN3-202ENST00000339997 MEGF9Q9H1U4 602 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms