RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SPIN2BQ9BPZ2 258 aa4.65□□□□□ -1.66
CSDE1-202ENST00000339438 SLC39A9Q9NUM3 307 aa4.65□□□□□ -1.66
CSDE1-202ENST00000339438 COPS7AQ9UBW8 275 aa4.65□□□□□ -1.66
CSDE1-202ENST00000339438 LOXL2Q9Y4K0 774 aa4.65□□□□□ -1.66
CSDE1-202ENST00000339438 H0Y980 276 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 IGFBP2P18065 325 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 CD1BP29016 333 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 TFF3Q07654 80 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 HIST3H3Q16695 136 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 ZNF695Q8IW36 515 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 ZNF843Q8N446 348 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 FAM222BQ8WU58 562 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 COMMD5Q9GZQ3 224 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 SCRT2Q9NQ03 307 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 C1RLQ9NZP8 487 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 TRBV9A0A0B4J1U6 114 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 FAM181BA6NEQ2 426 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 RER1O15258 196 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 OR7C2O60412 319 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 MT-CO3P00414 261 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 IGKV1-5P01602 117 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 HLA-DRB1P01911 266 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 CRYAAP02489 173 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 FCGR2AP12318 317 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 SPINK2P20155 84 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 AZU1P20160 251 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 COL8A2P25067 703 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 IL12BP29460 328 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 IER3P46695 156 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 PIGYQ3MUY2 71 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 ZNF439Q8NDP4 499 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 APOBEC3DQ96AK3 386 aaPredicted RBP4.65□□□□□ -1.67
CSDE1-202ENST00000339438 ATP6V0BQ99437 205 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 GPER1Q99527 375 aa4.65□□□□□ -1.67
CSDE1-202ENST00000339438 TECRQ9NZ01 308 aaKnown RBP4.65□□□□□ -1.67
CSDE1-202ENST00000339438 TMED7-TICAM2A0A0A6YYA0 188 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 SNURFLB1AK76 121 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 GNG7O60262 68 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 IGKV3-11P04433 115 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 THBS3P49746 956 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 IL11RAQ14626 422 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 OR8B8Q15620 311 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 STUMQ69YW2 141 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 WDR82Q6UXN9 313 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 SPACA3Q8IXA5 215 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 C18orf32Q8TCD1 76 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 WDR54Q9H977 334 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PGPEP1Q9NXJ5 209 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 TMEM189A5PLL7 270 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 SHISA8B8ZZ34 492 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 TNFRSF13BO14836 293 aaPredicted RBP4.64□□□□□ -1.67
CSDE1-202ENST00000339438 ANGPTL7O43827 346 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PDE6DO43924 150 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PGLYRP1O75594 196 aaPredicted RBP4.64□□□□□ -1.67
CSDE1-202ENST00000339438 NUDT3O95989 172 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 CDAP32320 146 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 CRYBA4P53673 196 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 CX3CL1P78423 397 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PLCXD2Q0VAA5 305 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 RHBDD2Q6NTF9 364 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 SCCPDHQ8NBX0 429 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 STXBP6Q8NFX7 210 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 QTRT1Q9BXR0 403 aaKnown RBP4.64□□□□□ -1.67
CSDE1-202ENST00000339438 KCNIP2Q9NS61 270 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 TRAV26-1A0A087WT03 109 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 SPRY1O43609 319 aaPredicted RBP4.64□□□□□ -1.67
CSDE1-202ENST00000339438 DHRS3O75911 302 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PMCHP20382 165 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 CA7P43166 264 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 RAC3P60763 192 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 SRSF7Q16629 238 aaKnown RBP eCLIP4.64□□□□□ -1.67
CSDE1-202ENST00000339438 ZNF718Q3SXZ3 478 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PHYHD1Q5SRE7 291 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 KLHL24Q6TFL4 600 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PPP1R32Q7Z5V6 425 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 OR10G9Q8NGN4 311 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 OR10G7Q8NGN6 311 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 CT55Q8WUE5 264 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 PIGTQ969N2 578 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 ST6GALNAC6Q969X2 333 aa4.64□□□□□ -1.67
CSDE1-202ENST00000339438 UBE2L5PA0A1B0GUS4 154 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 A0A1W2PQD3 144 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 FAM231BA6NCW3 169 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 RRHO14718 337 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 SYNGR2O43760 224 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 TOX4O94842 621 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 OR10J4P0C629 311 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 NPY1RP25929 384 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 REG1BP48304 166 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 FBXW4P57775 412 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 PCOLCEQ15113 449 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 TNXAQ16473 311 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 ATP1A1-AS1Q5TC04 95 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 TMEM211Q6ICI0 200 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 OR2Y1Q8NGV0 311 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 SCGB1C1Q8TD33 95 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 EMC6Q9BV81 110 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 CCL28Q9NRJ3 127 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 ABI3Q9P2A4 366 aa4.63□□□□□ -1.67
CSDE1-202ENST00000339438 ERRFI1Q9UJM3 462 aaPredicted RBP4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms