RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CRYM-AS1A6NIL9 109 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 IL6RP08887 468 aaPredicted RBP12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 OR5AC1P0C628 307 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 CD40LGP29965 261 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 RAB9AP51151 201 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 TRIM16LQ309B1 348 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 C8orf86Q6ZUL3 223 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 ZNF695Q8IW36 515 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 SEC22AQ96IW7 307 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 MS4A10Q96PG2 267 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 COA4Q9NYJ1 87 aa12.4□□□□□ -0.43
CCDC28A-201ENST00000332797 NAP1L6A6NFF2 107 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 HMX3A6NHT5 357 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 B3GALNT1O75752 331 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 OR9G9P0C7N8 305 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 AKR1C4P17516 323 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 TMED4Q7Z7H5 227 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 SGPP2Q8IWX5 399 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 MYOZ3Q8TDC0 251 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 TMEM230Q96A57 120 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 COMMD5Q9GZQ3 224 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 NSG2Q9Y328 171 aa12.39□□□□□ -0.43
CCDC28A-201ENST00000332797 CMYA5Q8N3K9 4069 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 TNCP24821 2201 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 CENPXA8MT69 81 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 TEX22C9J3V5 150 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 E7EUB6 86 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 SNAPC5O75971 98 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 TRGV3P03979 118 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 UCP1P25874 307 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 CDX1P47902 265 aaPredicted RBP12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 CCR6P51684 374 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 AKR1C2P52895 323 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 TPPP2P59282 170 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 OR2B8PP59922 312 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 H2BFWTQ7Z2G1 175 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 ZNF491Q8N8L2 437 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 SLC25A21Q9BQT8 299 aaPredicted RBP12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 CCDC32Q9BV29 185 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 TMEM222Q9H0R3 208 aa12.38□□□□□ -0.43
CCDC28A-201ENST00000332797 A0A1B0GW64 132 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 ATG12O94817 140 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 PF4P02776 101 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 FGF2P09038 288 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 KIAA0141Q14154 515 aaPredicted RBP12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 RBMS2Q15434 407 aaKnown RBP12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 CADM3Q8N126 398 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 UBE2E2Q96LR5 201 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 OR5B12Q96R08 314 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 C7orf50Q9BRJ6 194 aaKnown RBP12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 WDR12Q9GZL7 423 aaKnown RBP12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 SLA2Q9H6Q3 261 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 GNB4Q9HAV0 340 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 OR51B2Q9Y5P1 312 aa12.37□□□□□ -0.43
CCDC28A-201ENST00000332797 H3BUA1 57 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 IGKV1-5P01602 117 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 SLC6A1P30531 599 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 DHODHQ02127 395 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 ZNF846Q147U1 533 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 DEFB136Q30KP8 78 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 OR4A16Q8NH70 328 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 RNASE11Q8TAA1 199 aaKnown RBP12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 GLYATL2Q8WU03 294 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 C4orf3Q8WVX3 66 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 QTRT1Q9BXR0 403 aaKnown RBP12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 PRNDQ9UKY0 176 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 KCNIP3Q9Y2W7 256 aa12.36□□□□□ -0.43
CCDC28A-201ENST00000332797 TEX50A0A1B0GTY4 177 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 CGB1A6NKQ9 187 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 C15orf61A6NNL5 157 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 AREGP15514 252 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 DEFA5Q01523 94 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 IZUMO4Q1ZYL8 232 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 SLC25A42Q86VD7 318 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 TTC9CQ8N5M4 171 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 OR1L8Q8NGR8 309 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 LHFPL5Q8TAF8 219 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 DUX3Q96PT4 197 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 HINT2Q9BX68 163 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 PRR13Q9NZ81 148 aa12.35□□□□□ -0.43
CCDC28A-201ENST00000332797 DBX1A6NMT0 343 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 PLA2G10O15496 165 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 RBMXL2O75526 392 aaKnown RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 CDS2O95674 445 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 IGHV3-11P01762 117 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 PRH1P02810 166 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 REG1AP05451 166 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 TRAPPC2P0DI81 140 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 TRAPPC2BP0DI82 140 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 ANXA3P12429 323 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 BTCP35070 178 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 SUPT4H1P63272 117 aaKnown RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 TMEM187Q14656 261 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 TMEM268Q5VZI3 342 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 ETV3LQ6ZN32 361 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 C19orf35Q6ZS72 473 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 CENPSQ8N2Z9 138 aa12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 RBPMSQ93062 196 aaKnown RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 RRNAD1Q96FB5 475 aaKnown RBP12.34□□□□□ -0.43
CCDC28A-201ENST00000332797 GALNT14Q96FL9 552 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms