RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PRRT1Q99946 306 aa10.88□□□□□ -0.67
LIMS1-201ENST00000332345 MCRIP2Q9BUT9 160 aaKnown RBP10.88□□□□□ -0.67
LIMS1-201ENST00000332345 GPR61Q9BZJ8 451 aa10.88□□□□□ -0.67
LIMS1-201ENST00000332345 TMEM140Q9NV12 185 aa10.88□□□□□ -0.67
LIMS1-201ENST00000332345 COPZ2Q9P299 210 aa10.88□□□□□ -0.67
LIMS1-201ENST00000332345 SCP2D1Q9UJQ7 156 aa10.88□□□□□ -0.67
LIMS1-201ENST00000332345 NOTCH1P46531 2555 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 SNAPC5O75971 98 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 IL6RP08887 468 aaPredicted RBP10.87□□□□□ -0.67
LIMS1-201ENST00000332345 LGALS1P09382 135 aaKnown RBP10.87□□□□□ -0.67
LIMS1-201ENST00000332345 OR8U8P0C7N1 319 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 PI3P19957 117 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 PPP5CP53041 499 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 AP3S2P59780 193 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 ZNF616Q08AN1 781 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 SURF2Q15527 256 aaPredicted RBP10.87□□□□□ -0.67
LIMS1-201ENST00000332345 C1QL4Q86Z23 238 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 ADAD2Q8NCV1 583 aaKnown RBP10.87□□□□□ -0.67
LIMS1-201ENST00000332345 OR4C16Q8NGL9 310 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 MARCH1Q8TCQ1 289 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 USMG5Q96IX5 58 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 SCGB3A2Q96PL1 93 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 COMMD5Q9GZQ3 224 aa10.87□□□□□ -0.67
LIMS1-201ENST00000332345 C14orf166Q9Y224 244 aaKnown RBP10.87□□□□□ -0.67
LIMS1-201ENST00000332345 HMX3A6NHT5 357 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 B3GALNT1O75752 331 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 DHFRP00374 187 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 IGHV3-11P01762 117 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 HSPB1P04792 205 aaKnown RBP10.86□□□□□ -0.67
LIMS1-201ENST00000332345 CTSDP07339 412 aaPredicted RBP10.86□□□□□ -0.67
LIMS1-201ENST00000332345 RPA2P15927 270 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 FAUP35544 74 aaKnown RBP10.86□□□□□ -0.67
LIMS1-201ENST00000332345 G6PCP35575 357 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 ETV6P41212 452 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 C10orf55Q5SWW7 151 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 FAAP20Q6NZ36 180 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 OR51S1Q8NGJ8 323 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 OR13C8Q8NGS7 320 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 TSC22D3Q99576 134 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 MCUBQ9NWR8 336 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 FKBP11Q9NYL4 201 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 V9GYH0 126 aa10.86□□□□□ -0.67
LIMS1-201ENST00000332345 TRAV3A0A0B4J244 114 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 C3orf85A0A1B0GTC6 90 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 TEX22C9J3V5 150 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 E7EUB6 86 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 LINC01619G3V211 115 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 H0Y980 276 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 ATG12O94817 140 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 FHL3Q13643 280 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 BEAN1Q3B7T3 259 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 KPRPQ5T749 579 aaPredicted RBP10.85□□□□□ -0.67
LIMS1-201ENST00000332345 H2BFWTQ7Z2G1 175 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 TOMM5Q8N4H5 51 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 OR6Q1Q8NGQ2 317 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 SRSF8Q9BRL6 282 aaKnown RBP10.85□□□□□ -0.67
LIMS1-201ENST00000332345 SLC2A8Q9NY64 477 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 ZNF257Q9Y2Q1 563 aa10.85□□□□□ -0.67
LIMS1-201ENST00000332345 FAM223BA6NKX1 122 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 NPIPB5A8MRT5 1133 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 CRYGCP07315 174 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 OR2B8PP59922 312 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 THOC7Q6I9Y2 204 aaKnown RBP10.84□□□□□ -0.67
LIMS1-201ENST00000332345 FAM223AQ8IWN6 122 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 NECAP1Q8NC96 275 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 OR1L8Q8NGR8 309 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 DEDD2Q8WXF8 326 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 SEC22AQ96IW7 307 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 QTRT1Q9BXR0 403 aaKnown RBP10.84□□□□□ -0.67
LIMS1-201ENST00000332345 ALX4Q9H161 411 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-201ENST00000332345 RANGRFQ9HD47 186 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-201ENST00000332345 PRNDQ9UKY0 176 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 GPR132Q9UNW8 380 aa10.84□□□□□ -0.67
LIMS1-201ENST00000332345 TRBV9A0A0B4J1U6 114 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 TEX13DA0A0J9YY54 714 aaPredicted RBP10.83□□□□□ -0.68
LIMS1-201ENST00000332345 TEX50A0A1B0GTY4 177 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 TRAPPC2P0DI81 140 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 TRAPPC2BP0DI82 140 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 DEFA4P12838 97 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 PSMB6P28072 239 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 RHOGP84095 191 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 ATP5G2Q06055 141 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 ZNF79Q15937 498 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 HSD17B13Q7Z5P4 300 aaPredicted RBP10.83□□□□□ -0.68
LIMS1-201ENST00000332345 GDPD1Q8N9F7 314 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 OR4A16Q8NH70 328 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 MRGPRFQ96AM1 343 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 TP53RKQ96S44 253 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 RTBDNQ9BSG5 229 aaPredicted RBP10.83□□□□□ -0.68
LIMS1-201ENST00000332345 ZMAT5Q9UDW3 170 aaKnown RBP10.83□□□□□ -0.68
LIMS1-201ENST00000332345 OR51B2Q9Y5P1 312 aa10.83□□□□□ -0.68
LIMS1-201ENST00000332345 A0A1B0GW64 132 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 ANKRD34BA5PLL1 514 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 CYB5BO43169 146 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 IGKV1-39P01597 117 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 PRH1P02810 166 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 IGKV1D-39P04432 117 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 MYOD1P15172 320 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 AREGP15514 252 aa10.82□□□□□ -0.68
LIMS1-201ENST00000332345 HIST1H1BP16401 226 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms