RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NKX2-8O15522 239 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 MS4A6AQ9H2W1 248 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 ZNF488Q96MN9 340 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 ATOH7Q8N100 152 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 DNASE2BQ8WZ79 361 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 FCGR2BP31994 310 aaPredicted RBP12.29□□□□□ -0.44
COL7A1-201ENST00000328333 PDCD1Q15116 288 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 TIMP4Q99727 224 aa12.29□□□□□ -0.44
COL7A1-201ENST00000328333 TRBV5-7A0A0A0MS05 114 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 VN1R4Q7Z5H5 301 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 FGFRL1Q8N441 504 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 CACNG8Q8WXS5 425 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 NANOS3P60323 173 aaKnown RBP12.28□□□□□ -0.44
COL7A1-201ENST00000328333 FAM106AQ4KMX7 169 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 AMER3Q8N944 861 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 PHLDA1Q8WV24 401 aaPredicted RBP12.28□□□□□ -0.44
COL7A1-201ENST00000328333 TRAV8-4A0A0B4J246 113 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 SELENOHQ8IZQ5 122 aaKnown RBP12.28□□□□□ -0.44
COL7A1-201ENST00000328333 GCHFRP30047 84 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 FAM159AQ6UWV7 190 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 TMEM170AQ8WVE7 144 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 PRDM14Q9GZV8 571 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 DXOO77932 396 aaKnown RBP12.28□□□□□ -0.44
COL7A1-201ENST00000328333 Q96M66 194 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 ALPK3Q96L96 1907 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 ORMDL2Q53FV1 153 aa12.28□□□□□ -0.44
COL7A1-201ENST00000328333 CCL7P80098 99 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 IFITM2Q01629 132 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 RNFT1Q5M7Z0 435 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 MS4A4AQ96JQ5 239 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 FZR1Q9UM11 496 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 CCL27Q9Y4X3 112 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 A0A1W2PRS3 328 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 NPFFO15130 113 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 C14orf144Q96I85 54 aa12.27□□□□□ -0.44
COL7A1-201ENST00000328333 METTL12A8MUP2 240 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 OTX1P32242 354 aaPredicted RBP12.27□□□□□ -0.45
COL7A1-201ENST00000328333 SCGB3A1Q96QR1 104 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 ERVK11-1P61568 191 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 KIR3DL3Q8N743 410 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 ZNF576Q9H609 170 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 IGHV1OR21-1A0A087WYE8 117 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 IGHMP01871 453 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 CXCL10P02778 98 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 MPV17P39210 176 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 ZNF585BQ52M93 769 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 LIMS2Q7Z4I7 341 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 SRSF6Q13247 344 aaKnown RBP12.27□□□□□ -0.45
COL7A1-201ENST00000328333 OR52M1Q8NGK5 317 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 WNT10AQ9GZT5 417 aa12.27□□□□□ -0.45
COL7A1-201ENST00000328333 SYNGR3O43761 229 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 LOXL3P58215 753 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 Q5PR19 223 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 ADAMTS7Q9UKP4 1686 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 TRBV7-9A0A0J9YWB2 115 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BKO60814 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BJP06899 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 COX5BP10606 129 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BOP23527 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BBP33778 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BDP58876 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BCP62807 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 COL10A1Q03692 680 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST2H2BEQ16778 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BHQ93079 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BNQ99877 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIST1H2BMQ99879 126 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 RTN4RQ9BZR6 473 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 IGHV5-51A0A0C4DH38 117 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM238C9JI98 176 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 LGALS1P09382 135 aaKnown RBP12.26□□□□□ -0.45
COL7A1-201ENST00000328333 PGLYRP1O75594 196 aaPredicted RBP12.26□□□□□ -0.45
COL7A1-201ENST00000328333 ATXN8Q156A1 80 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 FUT5Q11128 374 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 MEGF9Q9H1U4 602 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 ZNF831Q5JPB2 1677 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 GGTLC3B5MD39 225 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 CEACAM4O75871 244 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 CXCL16Q9H2A7 254 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 SF3B6Q9Y3B4 125 aaKnown RBP12.26□□□□□ -0.45
COL7A1-201ENST00000328333 FAM181BA6NEQ2 426 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 HIGD1CA8MV81 97 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 DPM2O94777 84 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 CACNG7P62955 275 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 RNF224P0DH78 156 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 CRISPLD2Q9H0B8 497 aa12.26□□□□□ -0.45
COL7A1-201ENST00000328333 CRYBB3P26998 211 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 MGAT2Q10469 447 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 MEX3AA1L020 520 aaKnown RBP12.25□□□□□ -0.45
COL7A1-201ENST00000328333 GZMMP51124 257 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 PAX2Q02962 417 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 JPT1Q9UK76 154 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 PGPA6NDG6 321 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 CCL2P13500 99 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 TMEM95Q3KNT9 176 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 CACNA1AO00555 2505 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 A0A1W2PP11 408 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 NR2C2APQ86WQ0 139 aa12.25□□□□□ -0.45
COL7A1-201ENST00000328333 NRN1Q9NPD7 142 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms