RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PAPPAQ13219 1627 aa6.79□□□□□ -1.32
CIITA-201ENST00000324288 MPDU1O75352 247 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 MMD2Q8IY49 270 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 RCC1LQ96I51 464 aaKnown RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 RSPO4Q2I0M5 234 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 CLEC2AQ6UVW9 174 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 TTTY12Q9BZ98 90 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 CHST5Q9GZS9 411 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 GTSF1LQ9H1H1 148 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 LCTP09848 1927 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 DSPPQ9NZW4 1301 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 A0A1W2PRX2 142 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 DNASE2BQ8WZ79 361 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 TMEM70Q9BUB7 260 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 C5orf66Q9H5L9 145 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 WBP1LQ9NX94 342 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 THY1P04216 161 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 MEF2CQ06413 473 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 RPRMQ9NS64 109 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 NHP2Q9NX24 153 aaKnown RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 FAM106CPP0CH98 169 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 TNFRSF9Q07011 255 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 UNC119Q13432 240 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 COL22A1Q8NFW1 1626 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 RPL27AP46776 148 aaKnown RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 SPSB4Q96A44 273 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 FOXI3A8MTJ6 420 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 NDUFS6O75380 124 aaKnown RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 HPRT1P00492 218 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 CCDC144NLQ6NUI1 221 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 IGLV3-16A0A075B6K0 115 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 A0A1W2PPC1 479 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 PGLYRP1O75594 196 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 HIST1H1AQ02539 215 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 LHX8Q68G74 356 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 SIGMAR1Q99720 223 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 TMEM155Q4W5P6 130 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 LIMS2Q7Z4I7 341 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 SSBP4Q9BWG4 385 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 ZNF107Q9UII5 783 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 TAF1LQ8IZX4 1826 aa6.78□□□□□ -1.32
CIITA-201ENST00000324288 SETD2Q9BYW2 2564 aaPredicted RBP6.78□□□□□ -1.32
CIITA-201ENST00000324288 NPIPB6E9PJ23 425 aa6.77□□□□□ -1.32
CIITA-201ENST00000324288 RND2P52198 227 aa6.77□□□□□ -1.32
CIITA-201ENST00000324288 EFNB1P98172 346 aa6.77□□□□□ -1.32
CIITA-201ENST00000324288 SCGB3A1Q96QR1 104 aa6.77□□□□□ -1.32
CIITA-201ENST00000324288 DRD3P35462 400 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 FBXW9Q5XUX1 488 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 REPIN1Q9BWE0 567 aaKnown RBP6.77□□□□□ -1.33
CIITA-201ENST00000324288 XIRP1Q702N8 1843 aaKnown RBP6.77□□□□□ -1.33
CIITA-201ENST00000324288 LINC00614P0C842 121 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 ATP1A1-AS1Q5TC04 95 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 RAX2Q96IS3 184 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 H2BFSP57053 126 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 AMELYQ99218 206 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 SCNM1Q9BWG6 230 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 OR11H12B2RN74 326 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 C1orf185Q5T7R7 199 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 OR11H1Q8NG94 326 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 OR11H2Q8NH07 326 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 DANCRP0C864 163 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 LEPP41159 167 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 NHLRC3Q5JS37 347 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 C1QL4Q86Z23 238 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 NHSQ6T4R5 1651 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 ALS2Q96Q42 1657 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 SCO2A0A1W2PP80 73 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 GZMHP20718 246 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 ZIC1Q15915 447 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 ACSF3Q4G176 576 aaPredicted RBP6.77□□□□□ -1.33
CIITA-201ENST00000324288 VAX1Q5SQQ9 334 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 TXNDC17Q9BRA2 123 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 FAM206AQ9NX38 181 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 HLA-DQB1P01920 261 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 WDR87Q6ZQQ6 2873 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 M0R381 172 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 S1PR2O95136 353 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 SCAND1P57086 179 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 DCAF10Q5QP82 559 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 NDUFAF3Q9BU61 184 aa6.77□□□□□ -1.33
CIITA-201ENST00000324288 NPFFO15130 113 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 ATP5J2P56134 94 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 ATP5G2Q06055 141 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 TCF24Q7RTU0 167 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PSMG3Q9BT73 122 aaPredicted RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 TMEM52Q8NDY8 209 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 FGF5P12034 268 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 RNASE4P34096 147 aaKnown RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 SPRED2Q7Z698 418 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PIMREGQ9BSJ6 248 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 TUBA4BQ9H853 241 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 ZNF257Q9Y2Q1 563 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 ITGBL1O95965 494 aaPredicted RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 IGKV1D-16P01601 117 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 GZMMP51124 257 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 LSM6P62312 80 aaKnown RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 NPIPB3Q92617 1050 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 CCL19Q99731 98 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 MRPS16Q9Y3D3 137 aaKnown RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 COX11Q9Y6N1 276 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms