RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DMBX1Q8NFW5 382 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 OR9G4Q8NGQ1 327 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 OR4A5Q8NH83 315 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 BORCS5Q969J3 196 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 ELOVL1Q9BW60 279 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 PLEKHA2Q9HB19 425 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 SLC2A9Q9NRM0 540 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 COMMD9Q9P000 198 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 EXTL2Q9UBQ6 330 aa12.46□□□□□ -0.41
LSM1-201ENST00000311351 M0QYG6 137 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 GPR31O00270 319 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 UPK2O00526 184 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 PSMB6P28072 239 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 OR2B8PP59922 312 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 TSPAN5P62079 268 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 SPCS2Q15005 226 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 C15orf32Q32M92 178 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 IL34Q6ZMJ4 242 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 CD300LFQ8TDQ1 290 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 ASCL2Q99929 193 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 AIFM2Q9BRQ8 373 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 FBXL7Q9UJT9 491 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 S4R3C0 116 aa12.45□□□□□ -0.42
LSM1-201ENST00000311351 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.44□□□□□ -0.42
LSM1-201ENST00000311351 MARCH11A6NNE9 402 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 PPP5D1E7EU14 171 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 NDUFB8O95169 186 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 IGLV1-51P01701 117 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 IGHV3-23P01764 117 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 CTRB1P17538 263 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 F2RP25116 425 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 LPAR6P43657 344 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 VAX1Q5SQQ9 334 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 CTRB2Q6GPI1 263 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 CMTM1Q8IZ96 169 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 OR52I2Q8NH67 350 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 C15orf40Q8WUR7 153 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 FCAMRQ8WWV6 532 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 DGCR14Q96DF8 476 aaKnown RBP12.44□□□□□ -0.42
LSM1-201ENST00000311351 FANCD2OSQ96PS1 177 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 MIXL1Q9H2W2 232 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 SMAD5-AS1Q9Y6J3 95 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 STAB2Q8WWQ8 2551 aa12.44□□□□□ -0.42
LSM1-201ENST00000311351 IGLC7A0M8Q6 106 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 TPPPO94811 219 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 CRYGCP07315 174 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 ERVK-16P61578 105 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 ZNF585BQ52M93 769 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 CCDC140Q96MF4 163 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 COMMD5Q9GZQ3 224 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 CCDC59Q9P031 241 aaKnown RBP12.43□□□□□ -0.42
LSM1-201ENST00000311351 KLK11Q9UBX7 282 aa12.43□□□□□ -0.42
LSM1-201ENST00000311351 KRASP01116 189 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 HLA-AP01891 365 aaKnown RBP12.42□□□□□ -0.42
LSM1-201ENST00000311351 G6PCP35575 357 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 DMRTA1Q5VZB9 504 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 LAX1Q8IWV1 398 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 OR10W1Q8NGF6 305 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 ABHD1Q96SE0 405 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 NSG2Q9Y328 171 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 DMRT1Q9Y5R6 373 aa12.42□□□□□ -0.42
LSM1-201ENST00000311351 HUWE1Q7Z6Z7 4374 aaKnown RBP12.41□□□□□ -0.42
LSM1-201ENST00000311351 IGLV11-55A0A075B6I3 123 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 MFSD2BA6NFX1 497 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 CD3DP04234 171 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 CSN3P07498 182 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 DEFA4P12838 97 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 TBC1D26Q86UD7 250 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 ISOC1Q96CN7 298 aa12.41□□□□□ -0.42
LSM1-201ENST00000311351 QTRT1Q9BXR0 403 aaKnown RBP12.41□□□□□ -0.42
LSM1-201ENST00000311351 H3BMQ9 156 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 CTDSP2O14595 271 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 RGS5O15539 181 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 DHFRP00374 187 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 EDN2P20800 178 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 TATDN3Q17R31 274 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 RNASE10Q5GAN6 216 aaKnown RBP12.4□□□□□ -0.42
LSM1-201ENST00000311351 CLEC19AQ6UXS0 136 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 SLC38A6Q8IZM9 456 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 RABL2AQ9UBK7 228 aaPredicted RBP12.4□□□□□ -0.42
LSM1-201ENST00000311351 MTFP1Q9UDX5 166 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 RABL2BQ9UNT1 228 aa12.4□□□□□ -0.42
LSM1-201ENST00000311351 TEX50A0A1B0GTY4 177 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 CCDC160A6NGH7 325 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 FGF2P09038 288 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 HIST1H1BP16401 226 aaKnown RBP12.39□□□□□ -0.43
LSM1-201ENST00000311351 PI3P19957 117 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 ARL3P36405 182 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 PPP5CP53041 499 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 UCP3P55916 312 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 WT1-ASQ06250 92 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 KLK9Q2XQG4 91 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 LPCAT3Q6P1A2 487 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 ADAMTSL5Q6ZMM2 481 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 LHFPL1Q86WI0 220 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 OR4D10Q8NGI6 311 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 DYNC2LI1Q8TCX1 351 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 EEF1AKMT3Q96AZ1 226 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 HINT2Q9BX68 163 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 PEMTQ9UBM1 199 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms