RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 FHITP49789 147 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 FOXA3P55318 350 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-201ENST00000303354 TNFRSF9Q07011 255 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 KLHL30-AS1Q8NEE0 82 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 ANAPC16Q96DE5 110 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 NPFFR1Q9GZQ6 430 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 PITX3O75364 302 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 NDUFA3O95167 84 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 MYOD1P15172 320 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 CSRP1P21291 193 aaKnown RBP6.55□□□□□ -1.36
SCN9A-201ENST00000303354 TCTEX1D1Q8N7M0 179 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 ST6GALNAC3Q8NDV1 305 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 ZNRD1Q9P1U0 126 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 PIN1P1O15428 100 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 ZIC4Q8N9L1 334 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 OR10W1Q8NGF6 305 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 RNASEH2CQ8TDP1 164 aaKnown RBP6.55□□□□□ -1.36
SCN9A-201ENST00000303354 PHYHIPLQ96FC7 376 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 LINC00470Q9BZP3 86 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 BPESC1Q9GZL8 116 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 TMEM191AQ9H0A3 160 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 HSPB8Q9UJY1 196 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 COL11A1P12107 1806 aaPredicted RBP6.55□□□□□ -1.36
SCN9A-201ENST00000303354 ZNF236Q9UL36 1845 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 SFTA2Q6UW10 78 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 PGPEP1Q9NXJ5 209 aa6.55□□□□□ -1.36
SCN9A-201ENST00000303354 MRPL14Q6P1L8 145 aaKnown RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TGIF2-C20orf24A0A0A6YYL0 155 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ZP1P60852 638 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ELOBQ15370 118 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 IQCJQ1A5X6 159 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TMEM183BQ1AE95 376 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 PSMG4Q5JS54 123 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 KLF17Q5JT82 389 aaPredicted RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TAF15Q92804 592 aaKnown RBP eCLIP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TRPM6Q9BX84 2022 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 LOC390937A0A1W2PQ73 354 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 RHOGP84095 191 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TXNDC17Q9BRA2 123 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TDRD15B5MCY1 1934 aaKnown RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ATAD5Q96QE3 1844 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 VENTXO95231 258 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 HLA-DQB1P01920 261 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 MST1P26927 711 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 HINT1P49773 126 aaPredicted RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 WDR73Q6P4I2 378 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 OR5AN1Q8NGI8 311 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TRAV30A0A087WSZ9 112 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ZNF815PA8K554 130 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 MPTX1A8MV57 137 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 IGHV1-46P01743 117 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ACAA1P09110 424 aaPredicted RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 TSPOP30536 169 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 OR4D5Q8NGN0 318 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 MAP1LC3AQ9H492 121 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 B4DEV8 164 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 SLC17A3O00476 420 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 PLA2G10O15496 165 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 CD55P08174 381 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 IL6RP08887 468 aaPredicted RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ZNF79Q15937 498 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 LYRM7Q5U5X0 104 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 LURAP1LQ8IV03 231 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 CHAC2Q8WUX2 184 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 IMMP1LQ96LU5 166 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 GPR61Q9BZJ8 451 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 PKIBQ9C010 78 aa6.54□□□□□ -1.36
SCN9A-201ENST00000303354 ZNFX1Q9P2E3 1918 aaKnown RBP6.54□□□□□ -1.36
SCN9A-201ENST00000303354 J3QKU1 62 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 CTDSPLO15194 276 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 LYPD2Q6UXB3 125 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 HIST1H4GQ99525 98 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 C21orf62Q9NYP8 219 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 A0A0G2JK05 382 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 TCF15Q12870 199 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 ACTL10Q5JWF8 245 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 MIR17HGQ75NE6 70 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 FOCADQ5VW36 1801 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 A0A096LPF7 62 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 TRAV14DV4A0A0A6YYC5 116 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 C7orf77A4D0Y5 90 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 C8orf88P0DMB2 117 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 C8orf82Q6P1X6 216 aaPredicted RBP6.53□□□□□ -1.36
SCN9A-201ENST00000303354 PAQR4Q8N4S7 273 aaPredicted RBP6.53□□□□□ -1.36
SCN9A-201ENST00000303354 RAB24Q969Q5 203 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 PARLQ9H300 379 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 TRAV12-3A0A0B4J271 114 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 RPL15P61313 204 aaKnown RBP6.53□□□□□ -1.36
SCN9A-201ENST00000303354 NRGNQ92686 78 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 CXCL2P19875 107 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 ERASQ7Z444 233 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 ZNF383Q8NA42 475 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 ST6GALNAC6Q969X2 333 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 AQP10Q96PS8 301 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 SAA2-SAA4A0A096LPE2 208 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 SAA2P0DJI9 122 aaPredicted RBP6.53□□□□□ -1.36
SCN9A-201ENST00000303354 PTGDSP41222 190 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 C10orf55Q5SWW7 151 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 TRBV5-3A0A0A0MS03 114 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms