RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 FAM90A9PA6NNJ1 464 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 SYNGR2O43760 224 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 ZNF25P17030 456 aaPredicted RBP12.67□□□□□ -0.38
LSM6-201ENST00000296581 EWSR1Q01844 656 aaKnown RBP eCLIP12.67□□□□□ -0.38
LSM6-201ENST00000296581 ABHD12Q8N2K0 398 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 TNFRSF14Q92956 283 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 BSCL2Q96G97 398 aaPredicted RBP12.67□□□□□ -0.38
LSM6-201ENST00000296581 HSPB7Q9UBY9 170 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 MYO18BQ8IUG5 2567 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 SPTAN1Q13813 2472 aaKnown RBP12.67□□□□□ -0.38
LSM6-201ENST00000296581 IGSF23A1L1A6 192 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 GAPDHP04406 335 aaKnown RBP12.67□□□□□ -0.38
LSM6-201ENST00000296581 LIPFP07098 398 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 TMEM252Q8N6L7 170 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 BEND2Q8NDZ0 799 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 ST6GALNAC6Q969X2 333 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 TMEM186Q96B77 213 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 SSBP3Q9BWW4 388 aaPredicted RBP12.67□□□□□ -0.38
LSM6-201ENST00000296581 SLC25A31Q9H0C2 315 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 GOLT1BQ9Y3E0 138 aa12.67□□□□□ -0.38
LSM6-201ENST00000296581 FBXO24O75426 580 aa12.66□□□□□ -0.38
LSM6-201ENST00000296581 MAS1LP35410 378 aa12.66□□□□□ -0.38
LSM6-201ENST00000296581 OR10X1Q8NGY0 326 aa12.66□□□□□ -0.38
LSM6-201ENST00000296581 WSB1Q9Y6I7 421 aa12.66□□□□□ -0.38
LSM6-201ENST00000296581 ARG1P05089 322 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 TAS2R30P59541 319 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 EIF5AP63241 154 aaKnown RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 KHDC3LQ587J8 217 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 RPL7L1Q6DKI1 246 aaKnown RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 OR5R1Q8NH85 324 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 SAT2Q96F10 170 aaPredicted RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 SMIM8Q96KF7 97 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 UBR5O95071 2799 aaPredicted RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 IGHV2-26A0A0B4J1V2 119 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 IGHV4-39P01824 125 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 OR9G9P0C7N8 305 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 ERVK-16P61578 105 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 RPL23AP62750 156 aaKnown RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 POU2AF1Q16633 256 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 SAPCD1Q5SSQ6 148 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 NOL4LQ96MY1 436 aaPredicted RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 MRPL20Q9BYC9 149 aaKnown RBP12.65□□□□□ -0.38
LSM6-201ENST00000296581 SMIM3Q9BZL3 60 aa12.65□□□□□ -0.38
LSM6-201ENST00000296581 LOC105371242A0A075B767 164 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 A0A1W2PPE2 198 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 M0R036 132 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 JTBO76095 146 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 IGLV1-47P01700 117 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 SULT1A1P50225 295 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 UBE2KP61086 200 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 BAXQ07812 192 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 HIST3H2BBQ8N257 126 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 ZNF525Q8N782 197 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 OR5AN1Q8NGI8 311 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 SVIPQ8NHG7 77 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 CCL19Q99731 98 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 RBKSQ9H477 322 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 WFDC1Q9HC57 220 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 SLC35D1Q9NTN3 355 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 DLEU1O43261 78 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 DVL1P1P54792 670 aaPredicted RBP12.64□□□□□ -0.39
LSM6-201ENST00000296581 RTL8BQ17RB0 113 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 C20orf24Q9BUV8 137 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 TMEM140Q9NV12 185 aa12.64□□□□□ -0.39
LSM6-201ENST00000296581 M0R1W7 72 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 AGPAT2O15120 278 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 IL3RAP26951 378 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 RPS10P46783 165 aaKnown RBP12.63□□□□□ -0.39
LSM6-201ENST00000296581 PRRX1P54821 245 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 Q8N7P7 452 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 YPEL4Q96NS1 127 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 NABP2Q9BQ15 211 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 CLEC7AQ9BXN2 247 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 ARV1Q9H2C2 271 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 H0YJW9 148 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 SOX15O60248 233 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 HRASP01112 189 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 LINC00614P0C842 121 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 IAPPP10997 89 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 RELBQ01201 579 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 HNF4GQ14541 408 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 HLA-DRB5Q30154 266 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 VKORC1L1Q8N0U8 176 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 PSENENQ9NZ42 101 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 ONECUT1Q9UBC0 465 aa12.63□□□□□ -0.39
LSM6-201ENST00000296581 AKAP6Q13023 2319 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 PPP1R2P9O14990 202 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 APOA2P02652 100 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 DIAPH2-AS1Q14236 149 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 PDZD11Q5EBL8 140 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 GFI1BQ5VTD9 330 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 OR13D1Q8NGV5 346 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 PCGF1Q9BSM1 259 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 TMEM208Q9BTX3 173 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 QTRT1Q9BXR0 403 aaKnown RBP12.62□□□□□ -0.39
LSM6-201ENST00000296581 BPESC1Q9GZL8 116 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 ELOA3CA0A087WX78 387 aaPredicted RBP12.62□□□□□ -0.39
LSM6-201ENST00000296581 BORCS7-ASMTA0A0B4J1R7 106 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 IGKV1-16P04430 117 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 IL6RP08887 468 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms