RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TXNDC17Q9BRA2 123 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 CDC42EP3Q9UKI2 254 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 ACACAQ13085 2346 aa9.71□□□□□ -0.85
USP53-201ENST00000274030 MED12Q93074 2177 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 TFF1P04155 84 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 GCHFRP30047 84 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 PSG9Q00887 426 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 C2orf68Q2NKX9 166 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 PSG7Q13046 419 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 ZNF146Q15072 292 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 CENPWQ5EE01 88 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 CADP27708 2225 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 TAS2R60P59551 318 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 LBHQ53QV2 105 aaPredicted RBP9.71□□□□□ -0.86
USP53-201ENST00000274030 HIST1H4GQ99525 98 aa9.71□□□□□ -0.86
USP53-201ENST00000274030 ATAD5Q96QE3 1844 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 SPTAN1Q13813 2472 aaKnown RBP9.7□□□□□ -0.86
USP53-201ENST00000274030 LOC390937A0A1W2PQ73 354 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 PSMB11A5LHX3 300 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 COL5A1-AS1Q5SY13 56 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 DPH3Q96FX2 82 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 FOXA2Q9Y261 457 aaPredicted RBP9.7□□□□□ -0.86
USP53-201ENST00000274030 NBASA2RRP1 2371 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 A0A087WV48 116 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 IGKV1D-33P01593 117 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 IGKV1-33P01594 117 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 CBLN1P23435 193 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 GATA2P23769 480 aaPredicted RBP9.7□□□□□ -0.86
USP53-201ENST00000274030 BIVMQ86UB2 503 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 EEF1AKMT3Q96AZ1 226 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 IL6RP08887 468 aaPredicted RBP9.7□□□□□ -0.86
USP53-201ENST00000274030 TFF3Q07654 80 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 LINC00470Q9BZP3 86 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 CGAP01215 116 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 IGFBP2P18065 325 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 UCP3P55916 312 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 SFRP2Q96HF1 295 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 SDHCQ99643 169 aaPredicted RBP9.7□□□□□ -0.86
USP53-201ENST00000274030 COL6A6A6NMZ7 2263 aa9.7□□□□□ -0.86
USP53-201ENST00000274030 TRGC1P0CF51 173 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 STAG3L2P0CL84 134 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 IGHV1-2P23083 117 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 NHLRC3Q5JS37 347 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 CSRP2Q16527 193 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 GALNT14Q96FL9 552 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 IGHV2OR16-5A0A0B4J2B6 119 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 SLC17A3O00476 420 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 FOXH1O75593 365 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 PF4P02776 101 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 ZP1P60852 638 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 RCC1LQ96I51 464 aaKnown RBP9.69□□□□□ -0.86
USP53-201ENST00000274030 TRBV20OR9-2A0A075B6H5 130 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 M0R381 172 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 TNFSF10P50591 281 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 FAM159AQ6UWV7 190 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 OR4D5Q8NGN0 318 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 C18orf15Q96N68 181 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 REPIN1Q9BWE0 567 aaKnown RBP9.69□□□□□ -0.86
USP53-201ENST00000274030 GAGE10A6NGK3 116 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 NPIPB9F8W1W9 429 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 CD24P25063 80 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 CDKN1AP38936 164 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 CYP2G1PQ6ZSU1 146 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 ELOVL5Q9NYP7 299 aa9.69□□□□□ -0.86
USP53-201ENST00000274030 NPIPB13A6NJU9 1138 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 NPIPB4C9JG80 1138 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 C9orf106Q8NAJ2 232 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 COL25A1Q9BXS0 654 aaPredicted RBP9.68□□□□□ -0.86
USP53-201ENST00000274030 ZNF256Q9Y2P7 627 aaPredicted RBP9.68□□□□□ -0.86
USP53-201ENST00000274030 UMODP07911 640 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 NUP37Q8NFH4 326 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 KCNS1Q96KK3 526 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 NPCDR1Q9BY65 106 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 TMEM262E9PQX1 116 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 CCL3L1P16619 93 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 GPR183P32249 361 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 OR10S1Q8NGN2 331 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 BEX4Q9NWD9 120 aaPredicted RBP9.68□□□□□ -0.86
USP53-201ENST00000274030 TRAV24A0A0B4J272 114 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 IGHV3-11P01762 117 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 SNRPD3P62318 126 aaKnown RBP9.68□□□□□ -0.86
USP53-201ENST00000274030 COTL1Q14019 142 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 MEIG1Q5JSS6 88 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 TCF24Q7RTU0 167 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 DPM3Q9P2X0 92 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 FBXL7Q9UJT9 491 aa9.68□□□□□ -0.86
USP53-201ENST00000274030 COL5A3P25940 1745 aaPredicted RBP9.68□□□□□ -0.86
USP53-201ENST00000274030 RBFOX2O43251 390 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP53-201ENST00000274030 NBEAP1P0C6P0 100 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 LGALS3P17931 250 aaKnown RBP9.67□□□□□ -0.86
USP53-201ENST00000274030 GATAD1Q8WUU5 269 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 MOB4Q9Y3A3 225 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 TNS1Q9HBL0 1735 aaKnown RBP9.67□□□□□ -0.86
USP53-201ENST00000274030 ATRXP46100 2492 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 A0A0G2JK05 382 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 A0A1W2PRX2 142 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 TBX6O95947 436 aaPredicted RBP9.67□□□□□ -0.86
USP53-201ENST00000274030 PRB4P10163 310 aaPredicted RBP9.67□□□□□ -0.86
USP53-201ENST00000274030 SMAGPQ0VAQ4 97 aa9.67□□□□□ -0.86
USP53-201ENST00000274030 MRPL20Q9BYC9 149 aaKnown RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms